Strain Fitness in Marinobacter adhaerens HP15 around HP15_723

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_722 and HP15_723 are separated by 90 nucleotidesHP15_723 and HP15_724 are separated by 116 nucleotides HP15_722: HP15_722 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component (from data), at 730,343 to 731,320 _722 HP15_723: HP15_723 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data), at 731,411 to 733,600 _723 HP15_724: HP15_724 - periplasmic sensor signal transduction histidine kinase, at 733,717 to 735,531 _724 Position (kb) 731 732 733 734Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 730.417 kb on - strandat 730.417 kb on - strandat 730.417 kb on - strandat 730.556 kb on + strand, within HP15_722at 730.564 kb on - strand, within HP15_722at 730.564 kb on - strand, within HP15_722at 730.683 kb on - strand, within HP15_722at 730.739 kb on - strand, within HP15_722at 730.828 kb on + strand, within HP15_722at 730.869 kb on + strand, within HP15_722at 730.877 kb on - strand, within HP15_722at 730.906 kb on - strand, within HP15_722at 730.941 kb on - strand, within HP15_722at 730.962 kb on - strand, within HP15_722at 731.022 kb on + strand, within HP15_722at 731.113 kb on + strand, within HP15_722at 731.339 kb on - strandat 731.341 kb on + strandat 731.445 kb on + strandat 731.489 kb on - strandat 731.551 kb on + strandat 731.551 kb on + strandat 731.731 kb on - strand, within HP15_723at 731.731 kb on - strand, within HP15_723at 731.834 kb on - strand, within HP15_723at 731.876 kb on + strand, within HP15_723at 731.892 kb on + strand, within HP15_723at 731.900 kb on - strand, within HP15_723at 731.939 kb on - strand, within HP15_723at 732.062 kb on + strand, within HP15_723at 732.097 kb on - strand, within HP15_723at 732.124 kb on - strand, within HP15_723at 732.208 kb on + strand, within HP15_723at 732.216 kb on - strand, within HP15_723at 732.216 kb on - strand, within HP15_723at 732.216 kb on - strand, within HP15_723at 732.228 kb on + strand, within HP15_723at 732.300 kb on + strand, within HP15_723at 732.535 kb on - strand, within HP15_723at 732.538 kb on - strand, within HP15_723at 732.861 kb on + strand, within HP15_723at 732.923 kb on + strand, within HP15_723at 732.990 kb on + strand, within HP15_723at 732.998 kb on - strand, within HP15_723at 733.064 kb on + strand, within HP15_723at 733.077 kb on - strand, within HP15_723at 733.136 kb on - strand, within HP15_723at 733.318 kb on - strand, within HP15_723at 733.379 kb on - strand, within HP15_723at 733.397 kb on - strandat 733.460 kb on - strandat 733.492 kb on + strandat 733.514 kb on + strandat 733.546 kb on - strandat 733.713 kb on + strandat 733.766 kb on - strandat 733.817 kb on + strandat 733.817 kb on + strandat 733.820 kb on - strandat 733.825 kb on - strandat 733.987 kb on + strand, within HP15_724at 733.995 kb on - strand, within HP15_724at 734.228 kb on + strand, within HP15_724at 734.500 kb on - strand, within HP15_724at 734.502 kb on - strand, within HP15_724at 734.512 kb on - strand, within HP15_724at 734.563 kb on + strand, within HP15_724at 734.579 kb on + strand, within HP15_724

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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730,417 - -4.0
730,417 - -4.2
730,417 - -1.6
730,556 + HP15_722 0.22 -1.9
730,564 - HP15_722 0.23 -2.6
730,564 - HP15_722 0.23 -3.9
730,683 - HP15_722 0.35 -1.8
730,739 - HP15_722 0.40 -4.0
730,828 + HP15_722 0.50 -4.6
730,869 + HP15_722 0.54 -3.7
730,877 - HP15_722 0.55 -3.4
730,906 - HP15_722 0.58 -2.0
730,941 - HP15_722 0.61 -3.3
730,962 - HP15_722 0.63 -4.1
731,022 + HP15_722 0.69 +0.0
731,113 + HP15_722 0.79 -1.9
731,339 - -2.2
731,341 + -3.5
731,445 + -3.1
731,489 - -2.3
731,551 + -1.7
731,551 + -0.7
731,731 - HP15_723 0.15 -3.6
731,731 - HP15_723 0.15 -3.6
731,834 - HP15_723 0.19 -2.2
731,876 + HP15_723 0.21 -3.0
731,892 + HP15_723 0.22 -3.2
731,900 - HP15_723 0.22 -2.9
731,939 - HP15_723 0.24 -1.3
732,062 + HP15_723 0.30 -2.1
732,097 - HP15_723 0.31 -0.7
732,124 - HP15_723 0.33 -0.2
732,208 + HP15_723 0.36 -2.6
732,216 - HP15_723 0.37 -0.7
732,216 - HP15_723 0.37 -2.8
732,216 - HP15_723 0.37 -2.4
732,228 + HP15_723 0.37 -0.9
732,300 + HP15_723 0.41 -0.3
732,535 - HP15_723 0.51 -1.4
732,538 - HP15_723 0.51 -1.2
732,861 + HP15_723 0.66 -2.1
732,923 + HP15_723 0.69 -4.0
732,990 + HP15_723 0.72 +1.3
732,998 - HP15_723 0.72 -3.5
733,064 + HP15_723 0.75 -1.2
733,077 - HP15_723 0.76 -4.1
733,136 - HP15_723 0.79 -2.6
733,318 - HP15_723 0.87 -3.4
733,379 - HP15_723 0.90 -3.5
733,397 - -0.7
733,460 - -2.7
733,492 + -2.4
733,514 + -3.5
733,546 - -2.4
733,713 + -1.6
733,766 - -4.0
733,817 + -2.4
733,817 + -3.3
733,820 - -1.5
733,825 - -2.2
733,987 + HP15_724 0.15 -3.3
733,995 - HP15_724 0.15 -3.0
734,228 + HP15_724 0.28 -3.8
734,500 - HP15_724 0.43 -4.3
734,502 - HP15_724 0.43 -2.1
734,512 - HP15_724 0.44 -1.2
734,563 + HP15_724 0.47 -2.7
734,579 + HP15_724 0.47 -1.3

Or see this region's nucleotide sequence