Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3834 and HP15_3835 overlap by 4 nucleotides HP15_3835 and HP15_3836 are separated by 31 nucleotides HP15_3836 and HP15_3837 are separated by 93 nucleotides HP15_3837 and HP15_3838 are separated by 6 nucleotides
HP15_3834: HP15_3834 - glutathione S-transferase YghU, at 4,061,901 to 4,062,773
_3834
HP15_3835: HP15_3835 - conserved hypothetical protein, at 4,062,770 to 4,063,330
_3835
HP15_3836: HP15_3836 - hypothetical protein, at 4,063,362 to 4,063,544
_3836
HP15_3837: HP15_3837 - hypothetical spermidine synthase, at 4,063,638 to 4,064,381
_3837
HP15_3838: HP15_3838 - ankyrin-like protein, at 4,064,388 to 4,064,720
_3838
Position (kb)
4063
4064 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4062.403 kb on + strand, within HP15_3834 at 4062.405 kb on + strand, within HP15_3834 at 4062.466 kb on - strand, within HP15_3834 at 4062.480 kb on - strand, within HP15_3834 at 4062.483 kb on + strand, within HP15_3834 at 4062.610 kb on - strand, within HP15_3834 at 4062.633 kb on - strand, within HP15_3834 at 4062.666 kb on - strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.688 kb on - strand at 4062.688 kb on - strand at 4062.882 kb on - strand, within HP15_3835 at 4062.904 kb on - strand, within HP15_3835 at 4062.909 kb on - strand, within HP15_3835 at 4062.951 kb on + strand, within HP15_3835 at 4063.108 kb on + strand, within HP15_3835 at 4063.251 kb on + strand, within HP15_3835 at 4063.259 kb on - strand, within HP15_3835 at 4063.422 kb on - strand, within HP15_3836 at 4063.494 kb on + strand, within HP15_3836 at 4063.507 kb on - strand, within HP15_3836 at 4063.554 kb on - strand at 4063.647 kb on - strand at 4063.718 kb on + strand, within HP15_3837 at 4063.752 kb on + strand, within HP15_3837 at 4063.775 kb on - strand, within HP15_3837 at 4063.810 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.933 kb on + strand, within HP15_3837 at 4063.936 kb on - strand, within HP15_3837 at 4063.938 kb on + strand, within HP15_3837 at 4063.948 kb on + strand, within HP15_3837 at 4063.948 kb on + strand, within HP15_3837 at 4063.956 kb on - strand, within HP15_3837 at 4064.076 kb on + strand, within HP15_3837 at 4064.076 kb on + strand, within HP15_3837 at 4064.081 kb on + strand, within HP15_3837 at 4064.082 kb on - strand, within HP15_3837 at 4064.082 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.096 kb on + strand, within HP15_3837 at 4064.334 kb on + strand at 4064.358 kb on - strand at 4064.457 kb on - strand, within HP15_3838
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 4,062,403 + HP15_3834 0.58 -0.1 4,062,405 + HP15_3834 0.58 +0.1 4,062,466 - HP15_3834 0.65 +1.6 4,062,480 - HP15_3834 0.66 +1.7 4,062,483 + HP15_3834 0.67 -0.2 4,062,610 - HP15_3834 0.81 +1.7 4,062,633 - HP15_3834 0.84 -0.2 4,062,666 - HP15_3834 0.88 +0.4 4,062,680 + HP15_3834 0.89 -0.6 4,062,680 + HP15_3834 0.89 +1.9 4,062,680 + HP15_3834 0.89 -0.8 4,062,680 + HP15_3834 0.89 -1.4 4,062,688 - +0.4 4,062,688 - +0.0 4,062,882 - HP15_3835 0.20 -0.5 4,062,904 - HP15_3835 0.24 +2.2 4,062,909 - HP15_3835 0.25 +2.9 4,062,951 + HP15_3835 0.32 -0.2 4,063,108 + HP15_3835 0.60 -1.0 4,063,251 + HP15_3835 0.86 -0.1 4,063,259 - HP15_3835 0.87 -0.0 4,063,422 - HP15_3836 0.33 -0.3 4,063,494 + HP15_3836 0.72 -1.1 4,063,507 - HP15_3836 0.79 -1.3 4,063,554 - -0.5 4,063,647 - -0.1 4,063,718 + HP15_3837 0.11 +1.5 4,063,752 + HP15_3837 0.15 +0.9 4,063,775 - HP15_3837 0.18 +1.2 4,063,810 + HP15_3837 0.23 -0.2 4,063,928 + HP15_3837 0.39 +2.2 4,063,928 + HP15_3837 0.39 -0.6 4,063,928 + HP15_3837 0.39 -1.4 4,063,928 + HP15_3837 0.39 -0.4 4,063,933 + HP15_3837 0.40 +2.5 4,063,936 - HP15_3837 0.40 +0.1 4,063,938 + HP15_3837 0.40 -0.3 4,063,948 + HP15_3837 0.42 -0.3 4,063,948 + HP15_3837 0.42 +0.4 4,063,956 - HP15_3837 0.43 +2.2 4,064,076 + HP15_3837 0.59 +0.5 4,064,076 + HP15_3837 0.59 +0.4 4,064,081 + HP15_3837 0.60 +2.3 4,064,082 - HP15_3837 0.60 -0.7 4,064,082 - HP15_3837 0.60 -0.7 4,064,084 - HP15_3837 0.60 -0.5 4,064,084 - HP15_3837 0.60 +1.1 4,064,084 - HP15_3837 0.60 -0.6 4,064,084 - HP15_3837 0.60 +1.6 4,064,096 + HP15_3837 0.62 -0.5 4,064,334 + -0.5 4,064,358 - +2.2 4,064,457 - HP15_3838 0.21 -0.1
Or see this region's nucleotide sequence