Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2708 and HP15_2709 are separated by 7 nucleotides HP15_2709 and HP15_2710 overlap by 1 nucleotides
HP15_2708: HP15_2708 - transcriptional regulator, PaaX family, at 2,861,523 to 2,862,491
_2708
HP15_2709: HP15_2709 - thioesterase family protein, at 2,862,499 to 2,863,008
_2709
HP15_2710: HP15_2710 - L-lactate/malate dehydrogenase, at 2,863,008 to 2,863,931
_2710
Position (kb)
2862
2863
2864 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2861.519 kb on + strand at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.785 kb on + strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2861.793 kb on - strand, within HP15_2708 at 2862.018 kb on + strand, within HP15_2708 at 2862.046 kb on + strand, within HP15_2708 at 2862.054 kb on + strand, within HP15_2708 at 2862.062 kb on - strand, within HP15_2708 at 2862.125 kb on + strand, within HP15_2708 at 2862.276 kb on + strand, within HP15_2708 at 2862.307 kb on + strand, within HP15_2708 at 2862.453 kb on + strand at 2862.640 kb on - strand, within HP15_2709 at 2862.714 kb on + strand, within HP15_2709 at 2862.714 kb on + strand, within HP15_2709 at 2863.058 kb on + strand at 2863.066 kb on - strand at 2863.076 kb on - strand at 2863.259 kb on + strand, within HP15_2710 at 2863.321 kb on + strand, within HP15_2710 at 2863.358 kb on + strand, within HP15_2710 at 2863.376 kb on - strand, within HP15_2710 at 2863.581 kb on - strand, within HP15_2710 at 2863.648 kb on + strand, within HP15_2710 at 2863.707 kb on + strand, within HP15_2710 at 2863.753 kb on + strand, within HP15_2710 at 2863.760 kb on + strand, within HP15_2710 at 2863.790 kb on - strand, within HP15_2710 at 2863.799 kb on + strand, within HP15_2710 at 2863.848 kb on - strand at 2863.947 kb on + strand at 2863.947 kb on + strand at 2863.955 kb on - strand at 2863.955 kb on - strand at 2863.955 kb on - strand at 2863.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,861,519 + -0.5 2,861,785 + HP15_2708 0.27 +0.5 2,861,785 + HP15_2708 0.27 -0.5 2,861,785 + HP15_2708 0.27 -0.2 2,861,785 + HP15_2708 0.27 -1.2 2,861,793 - HP15_2708 0.28 -0.2 2,861,793 - HP15_2708 0.28 +1.7 2,861,793 - HP15_2708 0.28 +1.6 2,861,793 - HP15_2708 0.28 -1.3 2,861,793 - HP15_2708 0.28 +0.9 2,861,793 - HP15_2708 0.28 -0.4 2,862,018 + HP15_2708 0.51 -0.3 2,862,046 + HP15_2708 0.54 +1.9 2,862,054 + HP15_2708 0.55 +0.5 2,862,062 - HP15_2708 0.56 -0.9 2,862,125 + HP15_2708 0.62 +2.3 2,862,276 + HP15_2708 0.78 +2.3 2,862,307 + HP15_2708 0.81 -1.2 2,862,453 + +0.0 2,862,640 - HP15_2709 0.28 +1.2 2,862,714 + HP15_2709 0.42 -0.8 2,862,714 + HP15_2709 0.42 -0.7 2,863,058 + -0.7 2,863,066 - -0.2 2,863,076 - -0.9 2,863,259 + HP15_2710 0.27 -0.3 2,863,321 + HP15_2710 0.34 -0.1 2,863,358 + HP15_2710 0.38 -1.1 2,863,376 - HP15_2710 0.40 -0.3 2,863,581 - HP15_2710 0.62 -0.7 2,863,648 + HP15_2710 0.69 -0.1 2,863,707 + HP15_2710 0.76 -1.7 2,863,753 + HP15_2710 0.81 -0.2 2,863,760 + HP15_2710 0.81 +0.0 2,863,790 - HP15_2710 0.85 +2.0 2,863,799 + HP15_2710 0.86 +2.1 2,863,848 - -0.3 2,863,947 + -1.0 2,863,947 + +2.2 2,863,955 - -0.3 2,863,955 - -0.7 2,863,955 - -2.1 2,863,957 + -0.6
Or see this region's nucleotide sequence