Strain Fitness in Marinobacter adhaerens HP15 around HP15_2709

Experiment: D-Glucosamine Hydrochloride as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2708 and HP15_2709 are separated by 7 nucleotidesHP15_2709 and HP15_2710 overlap by 1 nucleotides HP15_2708: HP15_2708 - transcriptional regulator, PaaX family, at 2,861,523 to 2,862,491 _2708 HP15_2709: HP15_2709 - thioesterase family protein, at 2,862,499 to 2,863,008 _2709 HP15_2710: HP15_2710 - L-lactate/malate dehydrogenase, at 2,863,008 to 2,863,931 _2710 Position (kb) 2862 2863 2864Strain fitness (log2 ratio) -2 -1 0 1 2at 2861.519 kb on + strandat 2861.785 kb on + strand, within HP15_2708at 2861.785 kb on + strand, within HP15_2708at 2861.785 kb on + strand, within HP15_2708at 2861.785 kb on + strand, within HP15_2708at 2861.793 kb on - strand, within HP15_2708at 2861.793 kb on - strand, within HP15_2708at 2861.793 kb on - strand, within HP15_2708at 2861.793 kb on - strand, within HP15_2708at 2861.793 kb on - strand, within HP15_2708at 2861.793 kb on - strand, within HP15_2708at 2862.018 kb on + strand, within HP15_2708at 2862.046 kb on + strand, within HP15_2708at 2862.054 kb on + strand, within HP15_2708at 2862.062 kb on - strand, within HP15_2708at 2862.125 kb on + strand, within HP15_2708at 2862.276 kb on + strand, within HP15_2708at 2862.307 kb on + strand, within HP15_2708at 2862.453 kb on + strandat 2862.640 kb on - strand, within HP15_2709at 2862.714 kb on + strand, within HP15_2709at 2862.714 kb on + strand, within HP15_2709at 2863.058 kb on + strandat 2863.066 kb on - strandat 2863.076 kb on - strandat 2863.259 kb on + strand, within HP15_2710at 2863.321 kb on + strand, within HP15_2710at 2863.358 kb on + strand, within HP15_2710at 2863.376 kb on - strand, within HP15_2710at 2863.581 kb on - strand, within HP15_2710at 2863.648 kb on + strand, within HP15_2710at 2863.707 kb on + strand, within HP15_2710at 2863.753 kb on + strand, within HP15_2710at 2863.760 kb on + strand, within HP15_2710at 2863.790 kb on - strand, within HP15_2710at 2863.799 kb on + strand, within HP15_2710at 2863.848 kb on - strandat 2863.947 kb on + strandat 2863.947 kb on + strandat 2863.955 kb on - strandat 2863.955 kb on - strandat 2863.955 kb on - strandat 2863.957 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
remove
2,861,519 + -0.5
2,861,785 + HP15_2708 0.27 +0.5
2,861,785 + HP15_2708 0.27 -0.5
2,861,785 + HP15_2708 0.27 -0.2
2,861,785 + HP15_2708 0.27 -1.2
2,861,793 - HP15_2708 0.28 -0.2
2,861,793 - HP15_2708 0.28 +1.7
2,861,793 - HP15_2708 0.28 +1.6
2,861,793 - HP15_2708 0.28 -1.3
2,861,793 - HP15_2708 0.28 +0.9
2,861,793 - HP15_2708 0.28 -0.4
2,862,018 + HP15_2708 0.51 -0.3
2,862,046 + HP15_2708 0.54 +1.9
2,862,054 + HP15_2708 0.55 +0.5
2,862,062 - HP15_2708 0.56 -0.9
2,862,125 + HP15_2708 0.62 +2.3
2,862,276 + HP15_2708 0.78 +2.3
2,862,307 + HP15_2708 0.81 -1.2
2,862,453 + +0.0
2,862,640 - HP15_2709 0.28 +1.2
2,862,714 + HP15_2709 0.42 -0.8
2,862,714 + HP15_2709 0.42 -0.7
2,863,058 + -0.7
2,863,066 - -0.2
2,863,076 - -0.9
2,863,259 + HP15_2710 0.27 -0.3
2,863,321 + HP15_2710 0.34 -0.1
2,863,358 + HP15_2710 0.38 -1.1
2,863,376 - HP15_2710 0.40 -0.3
2,863,581 - HP15_2710 0.62 -0.7
2,863,648 + HP15_2710 0.69 -0.1
2,863,707 + HP15_2710 0.76 -1.7
2,863,753 + HP15_2710 0.81 -0.2
2,863,760 + HP15_2710 0.81 +0.0
2,863,790 - HP15_2710 0.85 +2.0
2,863,799 + HP15_2710 0.86 +2.1
2,863,848 - -0.3
2,863,947 + -1.0
2,863,947 + +2.2
2,863,955 - -0.3
2,863,955 - -0.7
2,863,955 - -2.1
2,863,957 + -0.6

Or see this region's nucleotide sequence