Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2581 and HP15_2582 overlap by 1 nucleotides HP15_2582 and HP15_2583 overlap by 4 nucleotides HP15_2583 and HP15_2584 overlap by 1 nucleotides HP15_2584 and HP15_2585 overlap by 4 nucleotides HP15_2585 and HP15_2586 are separated by 41 nucleotides
HP15_2581: HP15_2581 - monovalent cation/H+ antiporter subunit A, at 2,730,699 to 2,733,500
_2581
HP15_2582: HP15_2582 - NADH-ubiquinone oxidoreductase, chain 4L, at 2,733,500 to 2,733,868
_2582
HP15_2583: HP15_2583 - monovalent cation/H+ antiporter subunit D, at 2,733,865 to 2,735,382
_2583
HP15_2584: HP15_2584 - pH adaption potassium efflux system protein PhaE, at 2,735,382 to 2,735,870
_2584
HP15_2585: HP15_2585 - multiple resistance and pH regulation protein F, at 2,735,867 to 2,736,136
_2585
HP15_2586: HP15_2586 - monovalent cation/H+ antiporter subunit G, at 2,736,178 to 2,736,510
_2586
Position (kb)
2733
2734
2735
2736 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2733.259 kb on + strand at 2733.259 kb on + strand at 2733.421 kb on + strand at 2733.448 kb on - strand at 2733.448 kb on - strand at 2733.459 kb on + strand at 2733.520 kb on + strand at 2733.672 kb on + strand, within HP15_2582 at 2733.710 kb on + strand, within HP15_2582 at 2733.720 kb on - strand, within HP15_2582 at 2733.728 kb on - strand, within HP15_2582 at 2733.922 kb on - strand at 2733.959 kb on + strand at 2734.328 kb on - strand, within HP15_2583 at 2734.422 kb on + strand, within HP15_2583 at 2734.525 kb on - strand, within HP15_2583 at 2734.537 kb on + strand, within HP15_2583 at 2734.555 kb on + strand, within HP15_2583 at 2734.837 kb on - strand, within HP15_2583 at 2735.055 kb on + strand, within HP15_2583 at 2735.064 kb on - strand, within HP15_2583 at 2735.074 kb on + strand, within HP15_2583 at 2735.087 kb on + strand, within HP15_2583 at 2735.118 kb on + strand, within HP15_2583 at 2735.209 kb on - strand, within HP15_2583 at 2735.319 kb on - strand at 2735.333 kb on - strand at 2735.364 kb on + strand at 2735.404 kb on + strand at 2735.419 kb on + strand at 2735.478 kb on + strand, within HP15_2584 at 2735.564 kb on - strand, within HP15_2584 at 2735.619 kb on - strand, within HP15_2584 at 2735.676 kb on - strand, within HP15_2584 at 2735.915 kb on - strand, within HP15_2585 at 2735.984 kb on + strand, within HP15_2585 at 2735.992 kb on - strand, within HP15_2585 at 2736.011 kb on + strand, within HP15_2585 at 2736.121 kb on - strand at 2736.131 kb on - strand at 2736.319 kb on - strand, within HP15_2586 at 2736.321 kb on - strand, within HP15_2586 at 2736.331 kb on + strand, within HP15_2586 at 2736.367 kb on - strand, within HP15_2586
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 2,733,259 + -0.2 2,733,259 + -2.8 2,733,421 + -1.2 2,733,448 - -1.2 2,733,448 - -2.1 2,733,459 + -0.6 2,733,520 + -1.8 2,733,672 + HP15_2582 0.47 -3.1 2,733,710 + HP15_2582 0.57 -1.6 2,733,720 - HP15_2582 0.60 -0.3 2,733,728 - HP15_2582 0.62 -1.1 2,733,922 - -0.4 2,733,959 + -3.8 2,734,328 - HP15_2583 0.31 -1.8 2,734,422 + HP15_2583 0.37 -2.3 2,734,525 - HP15_2583 0.43 -0.3 2,734,537 + HP15_2583 0.44 -2.4 2,734,555 + HP15_2583 0.45 -1.2 2,734,837 - HP15_2583 0.64 -2.6 2,735,055 + HP15_2583 0.78 -2.4 2,735,064 - HP15_2583 0.79 -1.5 2,735,074 + HP15_2583 0.80 -0.3 2,735,087 + HP15_2583 0.81 -2.2 2,735,118 + HP15_2583 0.83 -2.7 2,735,209 - HP15_2583 0.89 -1.1 2,735,319 - -1.2 2,735,333 - -1.3 2,735,364 + -0.6 2,735,404 + -1.8 2,735,419 + -0.3 2,735,478 + HP15_2584 0.20 -3.8 2,735,564 - HP15_2584 0.37 -1.6 2,735,619 - HP15_2584 0.48 -1.3 2,735,676 - HP15_2584 0.60 -0.0 2,735,915 - HP15_2585 0.18 -1.3 2,735,984 + HP15_2585 0.43 -0.3 2,735,992 - HP15_2585 0.46 -1.5 2,736,011 + HP15_2585 0.53 -0.7 2,736,121 - -1.6 2,736,131 - -3.3 2,736,319 - HP15_2586 0.42 +0.3 2,736,321 - HP15_2586 0.43 -3.8 2,736,331 + HP15_2586 0.46 -1.1 2,736,367 - HP15_2586 0.57 +1.0
Or see this region's nucleotide sequence