Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_228 and HP15_227 overlap by 2 nucleotides HP15_227 and HP15_229 are separated by 256 nucleotides HP15_229 and HP15_230 are separated by 64 nucleotides
HP15_228: HP15_228 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 213,124 to 214,566
_228
HP15_227: HP15_227 - hypothetical protein, at 214,565 to 214,669
_227
HP15_229: HP15_229 - thioredoxin, at 214,926 to 215,270
_229
HP15_230: HP15_230 - molybdenum cofactor biosynthesis protein E, at 215,335 to 215,781
_230
Position (kb) 214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.582 kb on - strand, within HP15_228 at 213.672 kb on + strand, within HP15_228 at 213.858 kb on - strand, within HP15_228 at 213.872 kb on + strand, within HP15_228 at 213.921 kb on + strand, within HP15_228 at 213.924 kb on + strand, within HP15_228 at 213.929 kb on - strand, within HP15_228 at 214.034 kb on + strand, within HP15_228 at 214.060 kb on + strand, within HP15_228 at 214.242 kb on + strand, within HP15_228 at 214.254 kb on + strand, within HP15_228 at 214.289 kb on + strand, within HP15_228 at 214.332 kb on - strand, within HP15_228 at 214.406 kb on + strand, within HP15_228 at 214.414 kb on - strand, within HP15_228 at 214.414 kb on - strand, within HP15_228 at 214.446 kb on - strand at 214.651 kb on - strand, within HP15_227 at 214.743 kb on + strand at 214.767 kb on - strand at 214.778 kb on + strand at 214.802 kb on + strand at 214.871 kb on - strand at 215.032 kb on - strand, within HP15_229 at 215.397 kb on - strand, within HP15_230 at 215.441 kb on - strand, within HP15_230 at 215.482 kb on - strand, within HP15_230 at 215.486 kb on + strand, within HP15_230 at 215.500 kb on + strand, within HP15_230 at 215.523 kb on + strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.575 kb on - strand, within HP15_230 at 215.575 kb on - strand, within HP15_230
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 213,582 - HP15_228 0.32 -1.7 213,672 + HP15_228 0.38 -1.6 213,858 - HP15_228 0.51 -2.4 213,872 + HP15_228 0.52 -0.8 213,921 + HP15_228 0.55 -2.2 213,924 + HP15_228 0.55 -0.1 213,929 - HP15_228 0.56 -2.7 214,034 + HP15_228 0.63 +0.2 214,060 + HP15_228 0.65 -1.2 214,242 + HP15_228 0.77 -1.3 214,254 + HP15_228 0.78 -0.6 214,289 + HP15_228 0.81 +0.6 214,332 - HP15_228 0.84 +0.7 214,406 + HP15_228 0.89 +0.8 214,414 - HP15_228 0.89 -0.9 214,414 - HP15_228 0.89 -2.0 214,446 - +0.9 214,651 - HP15_227 0.82 -0.5 214,743 + +1.8 214,767 - -0.8 214,778 + -0.6 214,802 + -0.9 214,871 - -1.7 215,032 - HP15_229 0.31 +1.0 215,397 - HP15_230 0.14 +2.4 215,441 - HP15_230 0.24 -0.4 215,482 - HP15_230 0.33 +0.9 215,486 + HP15_230 0.34 +0.4 215,500 + HP15_230 0.37 +0.1 215,523 + HP15_230 0.42 -0.5 215,531 - HP15_230 0.44 -0.4 215,531 - HP15_230 0.44 -0.3 215,531 - HP15_230 0.44 -0.5 215,575 - HP15_230 0.54 +2.4 215,575 - HP15_230 0.54 -0.1
Or see this region's nucleotide sequence