Strain Fitness in Marinobacter adhaerens HP15 around HP15_2202

Experiment: D-Glucosamine Hydrochloride as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2201 and HP15_2202 overlap by 9 nucleotidesHP15_2202 and HP15_2203 are separated by 256 nucleotides HP15_2201: HP15_2201 - transcriptional regulator, LysR family, at 2,318,616 to 2,319,499 _2201 HP15_2202: HP15_2202 - tRNA-(ms(2)io(6)a)-hydroxylase, at 2,319,491 to 2,320,099 _2202 HP15_2203: HP15_2203 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 2,320,356 to 2,322,950 _2203 Position (kb) 2319 2320 2321Strain fitness (log2 ratio) -1 0 1 2at 2318.543 kb on - strandat 2318.543 kb on - strandat 2318.545 kb on + strandat 2318.796 kb on - strand, within HP15_2201at 2318.851 kb on + strand, within HP15_2201at 2318.864 kb on - strand, within HP15_2201at 2318.898 kb on + strand, within HP15_2201at 2318.902 kb on + strand, within HP15_2201at 2318.962 kb on + strand, within HP15_2201at 2318.967 kb on + strand, within HP15_2201at 2318.970 kb on - strand, within HP15_2201at 2318.971 kb on + strand, within HP15_2201at 2319.001 kb on - strand, within HP15_2201at 2319.070 kb on + strand, within HP15_2201at 2319.070 kb on + strand, within HP15_2201at 2319.078 kb on - strand, within HP15_2201at 2319.119 kb on - strand, within HP15_2201at 2319.170 kb on - strand, within HP15_2201at 2319.241 kb on - strand, within HP15_2201at 2319.277 kb on + strand, within HP15_2201at 2319.305 kb on + strand, within HP15_2201at 2319.479 kb on - strandat 2319.616 kb on + strand, within HP15_2202at 2319.672 kb on + strand, within HP15_2202at 2319.688 kb on - strand, within HP15_2202at 2319.715 kb on + strand, within HP15_2202at 2319.752 kb on - strand, within HP15_2202at 2319.882 kb on - strand, within HP15_2202at 2319.904 kb on + strand, within HP15_2202at 2319.912 kb on + strand, within HP15_2202at 2319.925 kb on + strand, within HP15_2202at 2319.995 kb on - strand, within HP15_2202at 2320.028 kb on + strand, within HP15_2202at 2320.038 kb on + strand, within HP15_2202at 2320.045 kb on + strandat 2320.061 kb on - strandat 2320.154 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
remove
2,318,543 - -0.7
2,318,543 - +1.7
2,318,545 + -0.6
2,318,796 - HP15_2201 0.20 -0.7
2,318,851 + HP15_2201 0.27 -1.0
2,318,864 - HP15_2201 0.28 +1.8
2,318,898 + HP15_2201 0.32 -0.5
2,318,902 + HP15_2201 0.32 +1.9
2,318,962 + HP15_2201 0.39 -0.5
2,318,967 + HP15_2201 0.40 -0.6
2,318,970 - HP15_2201 0.40 +2.4
2,318,971 + HP15_2201 0.40 +1.5
2,319,001 - HP15_2201 0.44 +1.1
2,319,070 + HP15_2201 0.51 +2.1
2,319,070 + HP15_2201 0.51 -0.9
2,319,078 - HP15_2201 0.52 +1.8
2,319,119 - HP15_2201 0.57 +2.0
2,319,170 - HP15_2201 0.63 +2.1
2,319,241 - HP15_2201 0.71 +1.5
2,319,277 + HP15_2201 0.75 +1.7
2,319,305 + HP15_2201 0.78 +1.6
2,319,479 - -0.2
2,319,616 + HP15_2202 0.21 -1.3
2,319,672 + HP15_2202 0.30 -0.8
2,319,688 - HP15_2202 0.32 -0.2
2,319,715 + HP15_2202 0.37 -0.3
2,319,752 - HP15_2202 0.43 +1.1
2,319,882 - HP15_2202 0.64 -0.5
2,319,904 + HP15_2202 0.68 -0.0
2,319,912 + HP15_2202 0.69 -0.8
2,319,925 + HP15_2202 0.71 -0.7
2,319,995 - HP15_2202 0.83 -0.5
2,320,028 + HP15_2202 0.88 -0.5
2,320,038 + HP15_2202 0.90 -1.3
2,320,045 + -0.6
2,320,061 - -0.4
2,320,154 + +1.9

Or see this region's nucleotide sequence