Strain Fitness in Marinobacter adhaerens HP15 around HP15_162

Experiment: D-Glucosamine Hydrochloride as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_161 and HP15_162 are separated by 659 nucleotidesHP15_162 and HP15_163 are separated by 68 nucleotides HP15_161: HP15_161 - secreted protein, at 158,594 to 158,857 _161 HP15_162: HP15_162 - hypothetical protein, at 159,517 to 159,714 _162 HP15_163: HP15_163 - cation efflux family protein, at 159,783 to 160,688 _163 Position (kb) 159 160Strain fitness (log2 ratio) -2 -1 0 1 2 3at 158.552 kb on - strandat 158.591 kb on - strandat 158.652 kb on + strand, within HP15_161at 158.775 kb on - strand, within HP15_161at 158.815 kb on + strand, within HP15_161at 158.815 kb on + strand, within HP15_161at 158.818 kb on - strand, within HP15_161at 158.873 kb on + strandat 158.972 kb on + strandat 159.035 kb on - strandat 159.037 kb on + strandat 159.040 kb on - strandat 159.066 kb on + strandat 159.074 kb on - strandat 159.119 kb on - strandat 159.129 kb on - strandat 159.185 kb on - strandat 159.214 kb on + strandat 159.217 kb on - strandat 159.222 kb on - strandat 159.260 kb on + strandat 159.310 kb on + strandat 159.361 kb on + strandat 159.393 kb on + strandat 159.411 kb on - strandat 159.459 kb on - strandat 159.543 kb on + strand, within HP15_162at 159.586 kb on + strand, within HP15_162at 159.594 kb on - strand, within HP15_162at 159.713 kb on + strandat 159.753 kb on + strandat 159.777 kb on - strandat 159.817 kb on - strandat 159.954 kb on - strand, within HP15_163at 159.954 kb on - strand, within HP15_163at 159.954 kb on - strand, within HP15_163at 159.956 kb on + strand, within HP15_163at 159.958 kb on + strand, within HP15_163at 159.966 kb on - strand, within HP15_163at 159.966 kb on - strand, within HP15_163at 160.019 kb on - strand, within HP15_163at 160.027 kb on + strand, within HP15_163at 160.069 kb on - strand, within HP15_163at 160.138 kb on + strand, within HP15_163at 160.138 kb on + strand, within HP15_163at 160.146 kb on - strand, within HP15_163at 160.146 kb on - strand, within HP15_163at 160.151 kb on - strand, within HP15_163at 160.158 kb on + strand, within HP15_163at 160.158 kb on + strand, within HP15_163at 160.166 kb on - strand, within HP15_163at 160.256 kb on - strand, within HP15_163at 160.290 kb on - strand, within HP15_163at 160.361 kb on + strand, within HP15_163at 160.418 kb on - strand, within HP15_163at 160.442 kb on + strand, within HP15_163at 160.450 kb on - strand, within HP15_163at 160.450 kb on - strand, within HP15_163at 160.497 kb on + strand, within HP15_163at 160.503 kb on + strand, within HP15_163at 160.509 kb on + strand, within HP15_163at 160.571 kb on - strand, within HP15_163at 160.580 kb on + strand, within HP15_163at 160.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N)
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158,552 - -1.0
158,591 - -1.3
158,652 + HP15_161 0.22 -1.2
158,775 - HP15_161 0.69 -0.4
158,815 + HP15_161 0.84 -0.7
158,815 + HP15_161 0.84 -0.2
158,818 - HP15_161 0.85 +1.7
158,873 + +2.7
158,972 + -0.1
159,035 - +2.6
159,037 + -0.5
159,040 - -1.5
159,066 + +0.0
159,074 - +2.3
159,119 - +2.0
159,129 - -0.8
159,185 - -0.5
159,214 + -1.0
159,217 - +0.5
159,222 - +1.6
159,260 + -0.8
159,310 + +0.9
159,361 + +1.3
159,393 + -1.2
159,411 - -0.8
159,459 - +2.6
159,543 + HP15_162 0.13 +0.1
159,586 + HP15_162 0.35 -1.0
159,594 - HP15_162 0.39 -0.8
159,713 + -0.2
159,753 + +1.9
159,777 - -0.5
159,817 - +1.6
159,954 - HP15_163 0.19 +0.0
159,954 - HP15_163 0.19 -0.7
159,954 - HP15_163 0.19 -0.3
159,956 + HP15_163 0.19 -0.2
159,958 + HP15_163 0.19 +0.5
159,966 - HP15_163 0.20 -1.5
159,966 - HP15_163 0.20 -0.4
160,019 - HP15_163 0.26 +2.0
160,027 + HP15_163 0.27 -0.4
160,069 - HP15_163 0.32 -0.8
160,138 + HP15_163 0.39 +0.5
160,138 + HP15_163 0.39 +3.0
160,146 - HP15_163 0.40 +1.6
160,146 - HP15_163 0.40 +0.0
160,151 - HP15_163 0.41 -0.5
160,158 + HP15_163 0.41 +3.2
160,158 + HP15_163 0.41 +0.3
160,166 - HP15_163 0.42 -2.4
160,256 - HP15_163 0.52 -0.7
160,290 - HP15_163 0.56 -0.5
160,361 + HP15_163 0.64 -0.0
160,418 - HP15_163 0.70 +2.0
160,442 + HP15_163 0.73 -1.1
160,450 - HP15_163 0.74 +0.4
160,450 - HP15_163 0.74 -0.4
160,497 + HP15_163 0.79 -0.6
160,503 + HP15_163 0.79 -0.4
160,509 + HP15_163 0.80 -0.6
160,571 - HP15_163 0.87 -0.1
160,580 + HP15_163 0.88 +3.7
160,642 - +2.6

Or see this region's nucleotide sequence