Strain Fitness in Shewanella amazonensis SB2B around Sama_1279

Experiment: casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos
1,567,291	+				+0.2
1,567,307	+				-0.9
1,567,307	+				-0.7
1,567,307	+				+1.6
1,567,307	+				+0.3
1,567,308	-				-2.3
1,567,309	+				+0.6
1,567,324	+				+0.1
1,567,324	+				+0.8
1,567,324	+				+0.6
1,567,324	+				+0.7
1,567,324	+				+0.1
1,567,324	+				+1.1
1,567,324	+				+0.7
1,567,324	+				-2.9
1,567,423	+		Sama_1278	0.12	-0.4
1,567,423	+		Sama_1278	0.12	+0.1
1,567,424	-		Sama_1278	0.12	-0.7
1,567,438	+		Sama_1278	0.13	-0.2
1,567,438	+		Sama_1278	0.13	+0.8
1,567,452	+		Sama_1278	0.15	+0.5
1,567,452	+		Sama_1278	0.15	+0.8
1,567,456	+		Sama_1278	0.16	-0.7
1,567,456	+		Sama_1278	0.16	-0.5
1,567,456	+		Sama_1278	0.16	-0.1
1,567,456	+		Sama_1278	0.16	-2.6
1,567,456	+		Sama_1278	0.16	+0.2
1,567,456	+		Sama_1278	0.16	+0.6
1,567,457	-		Sama_1278	0.16	+0.8
1,567,457	-		Sama_1278	0.16	+1.1
1,567,457	-		Sama_1278	0.16	-1.3
1,567,488	-		Sama_1278	0.20	-0.3
1,567,491	+		Sama_1278	0.20	+0.6
1,567,511	+		Sama_1278	0.22	+1.0
1,567,511	+		Sama_1278	0.22	+2.1
1,567,512	-		Sama_1278	0.22	-1.0
1,567,512	-		Sama_1278	0.22	-0.9
1,567,512	-		Sama_1278	0.22	-0.0
1,567,512	-		Sama_1278	0.22	-0.2
1,567,512	-		Sama_1278	0.22	+0.2
1,567,545	+		Sama_1278	0.26	-0.8
1,567,545	+		Sama_1278	0.26	-0.6
1,567,545	+		Sama_1278	0.26	-0.0
1,567,545	+		Sama_1278	0.26	-0.2
1,567,545	+		Sama_1278	0.26	+0.5
1,567,545	+		Sama_1278	0.26	-0.9
1,567,545	+		Sama_1278	0.26	-1.8
1,567,573	+		Sama_1278	0.30	-0.4
1,567,573	+		Sama_1278	0.30	-0.9
1,567,573	+		Sama_1278	0.30	-1.2
1,567,574	-		Sama_1278	0.30	+0.4
1,567,626	+		Sama_1278	0.36	-0.7
1,567,626	+		Sama_1278	0.36	-1.2
1,567,626	+		Sama_1278	0.36	-0.8
1,567,626	+		Sama_1278	0.36	-1.0
1,567,626	+		Sama_1278	0.36	-0.5
1,567,626	+		Sama_1278	0.36	-0.9
1,567,627	-		Sama_1278	0.36	+0.9
1,567,627	-		Sama_1278	0.36	-0.7
1,567,627	-		Sama_1278	0.36	-0.8
1,567,649	-		Sama_1278	0.39	-0.2
1,567,687	+		Sama_1278	0.44	-0.4
1,567,687	+		Sama_1278	0.44	-0.5
1,567,687	+		Sama_1278	0.44	+0.4
1,567,687	+		Sama_1278	0.44	+0.5
1,567,688	-		Sama_1278	0.44	+0.9
1,567,688	-		Sama_1278	0.44	-2.8
1,567,728	+		Sama_1278	0.49	-0.8
1,567,728	+		Sama_1278	0.49	-0.4
1,567,728	+		Sama_1278	0.49	+0.1
1,567,729	-		Sama_1278	0.49	-0.1
1,567,729	-		Sama_1278	0.49	-0.3
1,567,729	-		Sama_1278	0.49	+0.6
1,567,765	+		Sama_1278	0.53	-1.0
1,567,765	+		Sama_1278	0.53	+1.4
1,567,765	+		Sama_1278	0.53	+1.1
1,567,765	+		Sama_1278	0.53	+0.7
1,567,766	-		Sama_1278	0.53	-2.0
1,567,786	+		Sama_1278	0.56	+0.4
1,567,787	-		Sama_1278	0.56	+1.0
1,567,787	-		Sama_1278	0.56	-0.5
1,567,787	-		Sama_1278	0.56	-0.4
1,567,813	+		Sama_1278	0.59	-1.6
1,567,814	-		Sama_1278	0.59	-0.9
1,567,835	+		Sama_1278	0.62	+0.7
1,567,835	+		Sama_1278	0.62	+0.2
1,567,836	-		Sama_1278	0.62	+1.0
1,567,858	+		Sama_1278	0.64	+1.3
1,567,859	-		Sama_1278	0.64	+1.9
1,567,869	+		Sama_1278	0.66	+1.2
1,567,869	+		Sama_1278	0.66	+0.3
1,567,906	-		Sama_1278	0.70	-0.9
1,567,906	-		Sama_1278	0.70	-0.4
1,567,957	+		Sama_1278	0.76	+0.0
1,568,075	+				+0.4
1,568,095	+				-0.1
1,568,095	+				-0.7
1,568,095	+				-1.2
1,568,101	-				+1.2
1,568,121	-				-0.0
1,568,121	-				-0.8
1,568,121	-				+1.1
1,568,149	+				+0.6
1,568,150	-				-0.6
1,568,150	-				-2.3
1,568,492	-		Sama_1279	0.42	-0.3
1,568,526	-		Sama_1279	0.48	-0.4
1,568,567	+		Sama_1279	0.54	-0.4
1,568,636	+		Sama_1279	0.65	+0.6
1,568,643	+		Sama_1279	0.66	-2.0
1,568,644	-		Sama_1279	0.66	-1.0
1,568,644	-		Sama_1279	0.66	-0.1
1,568,644	-		Sama_1279	0.66	-0.8
1,568,647	+		Sama_1279	0.67	+0.0
1,568,647	+		Sama_1279	0.67	+0.6
1,568,647	+		Sama_1279	0.67	-0.3
1,568,648	-		Sama_1279	0.67	-0.6
1,568,658	+		Sama_1279	0.68	-0.3
1,568,658	+		Sama_1279	0.68	-0.7
1,568,659	-		Sama_1279	0.69	-0.9
1,568,659	-		Sama_1279	0.69	-1.7
1,568,659	-		Sama_1279	0.69	-0.2
1,568,858	+				-0.1
1,568,858	+				+0.1
1,568,859	-				-0.4
1,568,859	-				+0.9
1,568,859	-				-0.3
1,568,859	-				-0.8
1,568,859	-				+1.2
1,568,859	-				-0.7
1,568,904	+				+0.6
1,568,984	-				+0.9
1,569,012	-				-0.6
1,569,012	-				+0.1
1,569,012	-				+1.2
1,569,024	-				+0.6
1,569,039	-				-0.0
1,569,132	+		Sama_1280	0.10	-0.2
1,569,199	+		Sama_1280	0.15	+0.5
1,569,292	-		Sama_1280	0.22	-1.1
1,569,335	+		Sama_1280	0.25	+0.8
1,569,335	+		Sama_1280	0.25	-0.1
1,569,335	+		Sama_1280	0.25	+0.1
1,569,401	+		Sama_1280	0.29	+0.1
1,569,401	+		Sama_1280	0.29	+0.5
1,569,402	-		Sama_1280	0.29	+1.3
1,569,414	-		Sama_1280	0.30	-0.1
1,569,414	-		Sama_1280	0.30	+1.3
1,569,425	+		Sama_1280	0.31	-0.4
1,569,425	+		Sama_1280	0.31	+2.1
1,569,446	+		Sama_1280	0.32	-0.1
1,569,446	+		Sama_1280	0.32	-0.3
1,569,447	-		Sama_1280	0.32	-1.3
1,569,488	-		Sama_1280	0.35	-0.6
1,569,488	-		Sama_1280	0.35	+1.1
1,569,488	-		Sama_1280	0.35	+2.4
1,569,572	+		Sama_1280	0.41	+0.7
1,569,573	-		Sama_1280	0.41	+0.3
1,569,607	+		Sama_1280	0.44	+0.3
1,569,833	+		Sama_1280	0.59	+1.9
1,569,833	+		Sama_1280	0.59	-1.5
1,569,834	-		Sama_1280	0.59	-0.0
1,569,834	-		Sama_1280	0.59	-1.2
1,569,834	-		Sama_1280	0.59	-0.0
1,569,834	-		Sama_1280	0.59	-0.5