Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3183 and DvMF_3184 are separated by 302 nucleotides DvMF_3184 and DvMF_3185 are separated by 93 nucleotides DvMF_3185 and DvMF_3186 overlap by 8 nucleotides
DvMF_3183: DvMF_3183 - transcriptional regulator, TraR/DksA family (RefSeq), at 4,015,320 to 4,015,544
_3183
DvMF_3184: DvMF_3184 - Cupin 2 conserved barrel domain protein (RefSeq), at 4,015,847 to 4,016,251
_3184
DvMF_3185: DvMF_3185 - phosphate transporter (RefSeq), at 4,016,345 to 4,017,355
_3185
DvMF_3186: DvMF_3186 - protein of unknown function DUF47 (RefSeq), at 4,017,348 to 4,017,977
_3186
Position (kb)
4016
4017
4018 Strain fitness (log2 ratio)
-1
0
1
2 at 4015.379 kb on - strand, within DvMF_3183 at 4015.421 kb on - strand, within DvMF_3183 at 4015.505 kb on + strand, within DvMF_3183 at 4015.561 kb on + strand at 4015.977 kb on + strand, within DvMF_3184 at 4016.052 kb on + strand, within DvMF_3184 at 4016.312 kb on - strand at 4016.328 kb on + strand at 4016.490 kb on - strand, within DvMF_3185 at 4016.687 kb on - strand, within DvMF_3185 at 4016.687 kb on - strand, within DvMF_3185 at 4016.984 kb on + strand, within DvMF_3185 at 4016.993 kb on + strand, within DvMF_3185 at 4017.041 kb on + strand, within DvMF_3185 at 4017.092 kb on - strand, within DvMF_3185 at 4017.538 kb on + strand, within DvMF_3186 at 4017.547 kb on + strand, within DvMF_3186 at 4017.547 kb on + strand, within DvMF_3186 at 4017.586 kb on + strand, within DvMF_3186 at 4017.747 kb on - strand, within DvMF_3186 at 4017.966 kb on + strand at 4017.966 kb on + strand at 4017.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml remove 4,015,379 - DvMF_3183 0.26 -0.5 4,015,421 - DvMF_3183 0.45 +0.8 4,015,505 + DvMF_3183 0.82 -0.3 4,015,561 + -0.2 4,015,977 + DvMF_3184 0.32 -0.5 4,016,052 + DvMF_3184 0.51 -0.5 4,016,312 - -0.3 4,016,328 + -0.4 4,016,490 - DvMF_3185 0.14 +1.0 4,016,687 - DvMF_3185 0.34 +2.1 4,016,687 - DvMF_3185 0.34 +0.9 4,016,984 + DvMF_3185 0.63 +0.4 4,016,993 + DvMF_3185 0.64 +0.1 4,017,041 + DvMF_3185 0.69 +1.4 4,017,092 - DvMF_3185 0.74 +1.7 4,017,538 + DvMF_3186 0.30 -0.2 4,017,547 + DvMF_3186 0.32 +0.7 4,017,547 + DvMF_3186 0.32 +0.3 4,017,586 + DvMF_3186 0.38 +0.9 4,017,747 - DvMF_3186 0.63 +0.4 4,017,966 + +0.6 4,017,966 + +1.6 4,017,974 - +0.3
Or see this region's nucleotide sequence