Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3923 and HP15_3924 are separated by 37 nucleotides HP15_3924 and HP15_3925 are separated by 152 nucleotides HP15_3925 and HP15_3926 are separated by 30 nucleotides
HP15_3923: HP15_3923 - acyl-CoA dehydrogenase family protein, at 4,151,855 to 4,153,057
_3923
HP15_3924: HP15_3924 - short-chain dehydrogenase/reductase SDR, at 4,153,095 to 4,153,862
_3924
HP15_3925: HP15_3925 - phosphotransferase enzyme family protein, at 4,154,015 to 4,155,079
_3925
HP15_3926: HP15_3926 - acyl-CoA synthetase, at 4,155,110 to 4,156,774
_3926
Position (kb)
4154
4155
4156 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4153.032 kb on + strand at 4153.066 kb on + strand at 4153.074 kb on - strand at 4153.224 kb on + strand, within HP15_3924 at 4153.231 kb on + strand, within HP15_3924 at 4153.268 kb on - strand, within HP15_3924 at 4153.303 kb on + strand, within HP15_3924 at 4153.352 kb on - strand, within HP15_3924 at 4153.352 kb on - strand, within HP15_3924 at 4153.360 kb on + strand, within HP15_3924 at 4153.367 kb on + strand, within HP15_3924 at 4153.368 kb on - strand, within HP15_3924 at 4153.459 kb on + strand, within HP15_3924 at 4153.462 kb on + strand, within HP15_3924 at 4153.485 kb on - strand, within HP15_3924 at 4153.485 kb on - strand, within HP15_3924 at 4153.495 kb on - strand, within HP15_3924 at 4153.576 kb on + strand, within HP15_3924 at 4153.586 kb on - strand, within HP15_3924 at 4153.588 kb on - strand, within HP15_3924 at 4153.599 kb on + strand, within HP15_3924 at 4153.599 kb on + strand, within HP15_3924 at 4153.607 kb on - strand, within HP15_3924 at 4153.670 kb on + strand, within HP15_3924 at 4153.688 kb on - strand, within HP15_3924 at 4153.704 kb on + strand, within HP15_3924 at 4153.816 kb on + strand at 4153.817 kb on - strand at 4153.969 kb on + strand at 4154.025 kb on + strand at 4154.068 kb on + strand at 4154.142 kb on - strand, within HP15_3925 at 4154.185 kb on + strand, within HP15_3925 at 4154.187 kb on + strand, within HP15_3925 at 4154.195 kb on - strand, within HP15_3925 at 4154.257 kb on + strand, within HP15_3925 at 4154.310 kb on - strand, within HP15_3925 at 4154.344 kb on + strand, within HP15_3925 at 4154.369 kb on - strand, within HP15_3925 at 4154.390 kb on + strand, within HP15_3925 at 4154.434 kb on - strand, within HP15_3925 at 4154.559 kb on - strand, within HP15_3925 at 4154.587 kb on + strand, within HP15_3925 at 4154.617 kb on + strand, within HP15_3925 at 4154.629 kb on + strand, within HP15_3925 at 4154.708 kb on + strand, within HP15_3925 at 4154.772 kb on + strand, within HP15_3925 at 4154.780 kb on - strand, within HP15_3925 at 4154.799 kb on - strand, within HP15_3925 at 4154.839 kb on - strand, within HP15_3925 at 4154.909 kb on + strand, within HP15_3925 at 4155.034 kb on + strand at 4155.095 kb on - strand at 4155.138 kb on - strand at 4155.196 kb on - strand at 4155.221 kb on - strand at 4155.221 kb on - strand at 4155.373 kb on + strand, within HP15_3926 at 4155.501 kb on + strand, within HP15_3926 at 4155.534 kb on - strand, within HP15_3926 at 4155.584 kb on + strand, within HP15_3926 at 4155.587 kb on - strand, within HP15_3926 at 4155.592 kb on - strand, within HP15_3926 at 4155.592 kb on - strand, within HP15_3926 at 4155.592 kb on - strand, within HP15_3926 at 4155.624 kb on - strand, within HP15_3926 at 4155.629 kb on - strand, within HP15_3926 at 4155.686 kb on - strand, within HP15_3926 at 4155.756 kb on + strand, within HP15_3926 at 4155.791 kb on + strand, within HP15_3926
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 4,153,032 + +0.5 4,153,066 + +0.7 4,153,074 - +1.3 4,153,224 + HP15_3924 0.17 -0.2 4,153,231 + HP15_3924 0.18 -0.3 4,153,268 - HP15_3924 0.23 +2.6 4,153,303 + HP15_3924 0.27 +1.8 4,153,352 - HP15_3924 0.33 +2.1 4,153,352 - HP15_3924 0.33 -0.9 4,153,360 + HP15_3924 0.35 +0.4 4,153,367 + HP15_3924 0.35 -0.8 4,153,368 - HP15_3924 0.36 -0.1 4,153,459 + HP15_3924 0.47 -0.3 4,153,462 + HP15_3924 0.48 -0.2 4,153,485 - HP15_3924 0.51 +1.5 4,153,485 - HP15_3924 0.51 +0.6 4,153,495 - HP15_3924 0.52 +1.4 4,153,576 + HP15_3924 0.63 +1.4 4,153,586 - HP15_3924 0.64 +1.5 4,153,588 - HP15_3924 0.64 -0.8 4,153,599 + HP15_3924 0.66 +0.0 4,153,599 + HP15_3924 0.66 -1.2 4,153,607 - HP15_3924 0.67 +1.6 4,153,670 + HP15_3924 0.75 -1.9 4,153,688 - HP15_3924 0.77 +0.6 4,153,704 + HP15_3924 0.79 +1.4 4,153,816 + +0.3 4,153,817 - +1.4 4,153,969 + -0.8 4,154,025 + -0.5 4,154,068 + +0.1 4,154,142 - HP15_3925 0.12 +2.0 4,154,185 + HP15_3925 0.16 +0.9 4,154,187 + HP15_3925 0.16 -0.2 4,154,195 - HP15_3925 0.17 +0.3 4,154,257 + HP15_3925 0.23 +1.3 4,154,310 - HP15_3925 0.28 -0.5 4,154,344 + HP15_3925 0.31 +1.1 4,154,369 - HP15_3925 0.33 -1.2 4,154,390 + HP15_3925 0.35 +0.3 4,154,434 - HP15_3925 0.39 +0.1 4,154,559 - HP15_3925 0.51 +0.5 4,154,587 + HP15_3925 0.54 +1.0 4,154,617 + HP15_3925 0.57 -0.4 4,154,629 + HP15_3925 0.58 +2.2 4,154,708 + HP15_3925 0.65 -0.2 4,154,772 + HP15_3925 0.71 +0.3 4,154,780 - HP15_3925 0.72 +2.5 4,154,799 - HP15_3925 0.74 +1.3 4,154,839 - HP15_3925 0.77 -0.3 4,154,909 + HP15_3925 0.84 +1.3 4,155,034 + -0.3 4,155,095 - -0.2 4,155,138 - +0.5 4,155,196 - -1.1 4,155,221 - -0.7 4,155,221 - +2.1 4,155,373 + HP15_3926 0.16 +1.5 4,155,501 + HP15_3926 0.23 +0.6 4,155,534 - HP15_3926 0.25 +0.3 4,155,584 + HP15_3926 0.28 -0.7 4,155,587 - HP15_3926 0.29 -0.1 4,155,592 - HP15_3926 0.29 -0.8 4,155,592 - HP15_3926 0.29 +1.4 4,155,592 - HP15_3926 0.29 -0.2 4,155,624 - HP15_3926 0.31 +0.3 4,155,629 - HP15_3926 0.31 +1.6 4,155,686 - HP15_3926 0.35 +0.7 4,155,756 + HP15_3926 0.39 -0.4 4,155,791 + HP15_3926 0.41 -2.2
Or see this region's nucleotide sequence