Strain Fitness in Marinobacter adhaerens HP15 around HP15_3925

Experiment: L-Glutamic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3923 and HP15_3924 are separated by 37 nucleotidesHP15_3924 and HP15_3925 are separated by 152 nucleotidesHP15_3925 and HP15_3926 are separated by 30 nucleotides HP15_3923: HP15_3923 - acyl-CoA dehydrogenase family protein, at 4,151,855 to 4,153,057 _3923 HP15_3924: HP15_3924 - short-chain dehydrogenase/reductase SDR, at 4,153,095 to 4,153,862 _3924 HP15_3925: HP15_3925 - phosphotransferase enzyme family protein, at 4,154,015 to 4,155,079 _3925 HP15_3926: HP15_3926 - acyl-CoA synthetase, at 4,155,110 to 4,156,774 _3926 Position (kb) 4154 4155 4156Strain fitness (log2 ratio) -2 -1 0 1 2at 4153.032 kb on + strandat 4153.066 kb on + strandat 4153.074 kb on - strandat 4153.224 kb on + strand, within HP15_3924at 4153.231 kb on + strand, within HP15_3924at 4153.268 kb on - strand, within HP15_3924at 4153.303 kb on + strand, within HP15_3924at 4153.352 kb on - strand, within HP15_3924at 4153.352 kb on - strand, within HP15_3924at 4153.360 kb on + strand, within HP15_3924at 4153.367 kb on + strand, within HP15_3924at 4153.368 kb on - strand, within HP15_3924at 4153.459 kb on + strand, within HP15_3924at 4153.462 kb on + strand, within HP15_3924at 4153.485 kb on - strand, within HP15_3924at 4153.485 kb on - strand, within HP15_3924at 4153.495 kb on - strand, within HP15_3924at 4153.576 kb on + strand, within HP15_3924at 4153.586 kb on - strand, within HP15_3924at 4153.588 kb on - strand, within HP15_3924at 4153.599 kb on + strand, within HP15_3924at 4153.599 kb on + strand, within HP15_3924at 4153.607 kb on - strand, within HP15_3924at 4153.670 kb on + strand, within HP15_3924at 4153.688 kb on - strand, within HP15_3924at 4153.704 kb on + strand, within HP15_3924at 4153.816 kb on + strandat 4153.817 kb on - strandat 4153.969 kb on + strandat 4154.025 kb on + strandat 4154.068 kb on + strandat 4154.142 kb on - strand, within HP15_3925at 4154.185 kb on + strand, within HP15_3925at 4154.187 kb on + strand, within HP15_3925at 4154.195 kb on - strand, within HP15_3925at 4154.257 kb on + strand, within HP15_3925at 4154.310 kb on - strand, within HP15_3925at 4154.344 kb on + strand, within HP15_3925at 4154.369 kb on - strand, within HP15_3925at 4154.390 kb on + strand, within HP15_3925at 4154.434 kb on - strand, within HP15_3925at 4154.559 kb on - strand, within HP15_3925at 4154.587 kb on + strand, within HP15_3925at 4154.617 kb on + strand, within HP15_3925at 4154.629 kb on + strand, within HP15_3925at 4154.708 kb on + strand, within HP15_3925at 4154.772 kb on + strand, within HP15_3925at 4154.780 kb on - strand, within HP15_3925at 4154.799 kb on - strand, within HP15_3925at 4154.839 kb on - strand, within HP15_3925at 4154.909 kb on + strand, within HP15_3925at 4155.034 kb on + strandat 4155.095 kb on - strandat 4155.138 kb on - strandat 4155.196 kb on - strandat 4155.221 kb on - strandat 4155.221 kb on - strandat 4155.373 kb on + strand, within HP15_3926at 4155.501 kb on + strand, within HP15_3926at 4155.534 kb on - strand, within HP15_3926at 4155.584 kb on + strand, within HP15_3926at 4155.587 kb on - strand, within HP15_3926at 4155.592 kb on - strand, within HP15_3926at 4155.592 kb on - strand, within HP15_3926at 4155.592 kb on - strand, within HP15_3926at 4155.624 kb on - strand, within HP15_3926at 4155.629 kb on - strand, within HP15_3926at 4155.686 kb on - strand, within HP15_3926at 4155.756 kb on + strand, within HP15_3926at 4155.791 kb on + strand, within HP15_3926

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic
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4,153,032 + +0.5
4,153,066 + +0.7
4,153,074 - +1.3
4,153,224 + HP15_3924 0.17 -0.2
4,153,231 + HP15_3924 0.18 -0.3
4,153,268 - HP15_3924 0.23 +2.6
4,153,303 + HP15_3924 0.27 +1.8
4,153,352 - HP15_3924 0.33 +2.1
4,153,352 - HP15_3924 0.33 -0.9
4,153,360 + HP15_3924 0.35 +0.4
4,153,367 + HP15_3924 0.35 -0.8
4,153,368 - HP15_3924 0.36 -0.1
4,153,459 + HP15_3924 0.47 -0.3
4,153,462 + HP15_3924 0.48 -0.2
4,153,485 - HP15_3924 0.51 +1.5
4,153,485 - HP15_3924 0.51 +0.6
4,153,495 - HP15_3924 0.52 +1.4
4,153,576 + HP15_3924 0.63 +1.4
4,153,586 - HP15_3924 0.64 +1.5
4,153,588 - HP15_3924 0.64 -0.8
4,153,599 + HP15_3924 0.66 +0.0
4,153,599 + HP15_3924 0.66 -1.2
4,153,607 - HP15_3924 0.67 +1.6
4,153,670 + HP15_3924 0.75 -1.9
4,153,688 - HP15_3924 0.77 +0.6
4,153,704 + HP15_3924 0.79 +1.4
4,153,816 + +0.3
4,153,817 - +1.4
4,153,969 + -0.8
4,154,025 + -0.5
4,154,068 + +0.1
4,154,142 - HP15_3925 0.12 +2.0
4,154,185 + HP15_3925 0.16 +0.9
4,154,187 + HP15_3925 0.16 -0.2
4,154,195 - HP15_3925 0.17 +0.3
4,154,257 + HP15_3925 0.23 +1.3
4,154,310 - HP15_3925 0.28 -0.5
4,154,344 + HP15_3925 0.31 +1.1
4,154,369 - HP15_3925 0.33 -1.2
4,154,390 + HP15_3925 0.35 +0.3
4,154,434 - HP15_3925 0.39 +0.1
4,154,559 - HP15_3925 0.51 +0.5
4,154,587 + HP15_3925 0.54 +1.0
4,154,617 + HP15_3925 0.57 -0.4
4,154,629 + HP15_3925 0.58 +2.2
4,154,708 + HP15_3925 0.65 -0.2
4,154,772 + HP15_3925 0.71 +0.3
4,154,780 - HP15_3925 0.72 +2.5
4,154,799 - HP15_3925 0.74 +1.3
4,154,839 - HP15_3925 0.77 -0.3
4,154,909 + HP15_3925 0.84 +1.3
4,155,034 + -0.3
4,155,095 - -0.2
4,155,138 - +0.5
4,155,196 - -1.1
4,155,221 - -0.7
4,155,221 - +2.1
4,155,373 + HP15_3926 0.16 +1.5
4,155,501 + HP15_3926 0.23 +0.6
4,155,534 - HP15_3926 0.25 +0.3
4,155,584 + HP15_3926 0.28 -0.7
4,155,587 - HP15_3926 0.29 -0.1
4,155,592 - HP15_3926 0.29 -0.8
4,155,592 - HP15_3926 0.29 +1.4
4,155,592 - HP15_3926 0.29 -0.2
4,155,624 - HP15_3926 0.31 +0.3
4,155,629 - HP15_3926 0.31 +1.6
4,155,686 - HP15_3926 0.35 +0.7
4,155,756 + HP15_3926 0.39 -0.4
4,155,791 + HP15_3926 0.41 -2.2

Or see this region's nucleotide sequence