Strain Fitness in Shewanella amazonensis SB2B around Sama_0731

Experiment: D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0730 and Sama_0731 are separated by 94 nucleotidesSama_0731 and Sama_0732 overlap by 1 nucleotides Sama_0730: Sama_0730 - lipid A biosynthesis lauroyl acyltransferase (RefSeq), at 898,426 to 899,373 _0730 Sama_0731: Sama_0731 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 899,468 to 900,898 _0731 Sama_0732: Sama_0732 - hypothetical protein (RefSeq), at 900,898 to 901,779 _0732 Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1 2at 899.391 kb on - strandat 899.440 kb on + strandat 899.467 kb on + strandat 899.476 kb on + strandat 900.211 kb on + strand, within Sama_0731at 900.977 kb on + strandat 900.978 kb on - strandat 900.978 kb on - strandat 900.978 kb on - strandat 900.988 kb on - strand, within Sama_0732at 901.040 kb on + strand, within Sama_0732at 901.040 kb on + strand, within Sama_0732at 901.041 kb on - strand, within Sama_0732at 901.041 kb on - strand, within Sama_0732at 901.085 kb on + strand, within Sama_0732at 901.086 kb on - strand, within Sama_0732at 901.206 kb on + strand, within Sama_0732at 901.257 kb on - strand, within Sama_0732at 901.257 kb on - strand, within Sama_0732at 901.360 kb on + strand, within Sama_0732at 901.366 kb on + strand, within Sama_0732at 901.367 kb on - strand, within Sama_0732at 901.428 kb on + strand, within Sama_0732at 901.428 kb on + strand, within Sama_0732at 901.440 kb on + strand, within Sama_0732at 901.441 kb on - strand, within Sama_0732at 901.465 kb on - strand, within Sama_0732at 901.480 kb on + strand, within Sama_0732at 901.484 kb on + strand, within Sama_0732at 901.485 kb on - strand, within Sama_0732at 901.485 kb on - strand, within Sama_0732at 901.504 kb on + strand, within Sama_0732at 901.504 kb on + strand, within Sama_0732at 901.504 kb on + strand, within Sama_0732at 901.504 kb on + strand, within Sama_0732at 901.504 kb on + strand, within Sama_0732at 901.505 kb on - strand, within Sama_0732at 901.505 kb on - strand, within Sama_0732at 901.505 kb on - strand, within Sama_0732at 901.505 kb on - strand, within Sama_0732at 901.505 kb on - strand, within Sama_0732at 901.505 kb on - strand, within Sama_0732at 901.620 kb on + strand, within Sama_0732at 901.621 kb on - strand, within Sama_0732at 901.650 kb on + strand, within Sama_0732at 901.650 kb on + strand, within Sama_0732at 901.660 kb on + strand, within Sama_0732at 901.660 kb on + strand, within Sama_0732at 901.660 kb on + strand, within Sama_0732at 901.660 kb on + strand, within Sama_0732at 901.660 kb on + strand, within Sama_0732at 901.660 kb on + strand, within Sama_0732at 901.660 kb on + strand, within Sama_0732at 901.660 kb on + strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.661 kb on - strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.662 kb on + strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.663 kb on - strand, within Sama_0732at 901.666 kb on + strand, within Sama_0732at 901.667 kb on - strand, within Sama_0732at 901.686 kb on - strand, within Sama_0732at 901.686 kb on - strand, within Sama_0732at 901.705 kb on - strandat 901.761 kb on + strandat 901.761 kb on + strandat 901.761 kb on + strandat 901.761 kb on + strandat 901.762 kb on - strandat 901.762 kb on - strandat 901.762 kb on - strandat 901.762 kb on - strandat 901.767 kb on - strandat 901.835 kb on - strandat 901.835 kb on - strandat 901.835 kb on - strandat 901.840 kb on + strandat 901.840 kb on + strandat 901.840 kb on + strandat 901.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate
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899,391 - -0.1
899,440 + -0.4
899,467 + -1.7
899,476 + +0.4
900,211 + Sama_0731 0.52 +0.4
900,977 + +0.3
900,978 - -2.4
900,978 - +0.3
900,978 - +0.3
900,988 - Sama_0732 0.10 +0.2
901,040 + Sama_0732 0.16 +0.6
901,040 + Sama_0732 0.16 +0.8
901,041 - Sama_0732 0.16 +0.2
901,041 - Sama_0732 0.16 -0.8
901,085 + Sama_0732 0.21 +1.4
901,086 - Sama_0732 0.21 +1.4
901,206 + Sama_0732 0.35 +0.1
901,257 - Sama_0732 0.41 -1.1
901,257 - Sama_0732 0.41 -0.6
901,360 + Sama_0732 0.52 +0.7
901,366 + Sama_0732 0.53 +1.0
901,367 - Sama_0732 0.53 +0.8
901,428 + Sama_0732 0.60 +0.8
901,428 + Sama_0732 0.60 -0.9
901,440 + Sama_0732 0.61 +0.0
901,441 - Sama_0732 0.62 -0.6
901,465 - Sama_0732 0.64 +0.4
901,480 + Sama_0732 0.66 -1.4
901,484 + Sama_0732 0.66 +0.3
901,485 - Sama_0732 0.67 +1.3
901,485 - Sama_0732 0.67 -0.6
901,504 + Sama_0732 0.69 -0.1
901,504 + Sama_0732 0.69 -0.9
901,504 + Sama_0732 0.69 +0.6
901,504 + Sama_0732 0.69 -0.0
901,504 + Sama_0732 0.69 +0.7
901,505 - Sama_0732 0.69 +0.5
901,505 - Sama_0732 0.69 -0.4
901,505 - Sama_0732 0.69 -0.7
901,505 - Sama_0732 0.69 +0.8
901,505 - Sama_0732 0.69 -0.6
901,505 - Sama_0732 0.69 +0.2
901,620 + Sama_0732 0.82 +0.1
901,621 - Sama_0732 0.82 -0.2
901,650 + Sama_0732 0.85 +1.4
901,650 + Sama_0732 0.85 +0.6
901,660 + Sama_0732 0.86 +0.1
901,660 + Sama_0732 0.86 +1.5
901,660 + Sama_0732 0.86 +1.2
901,660 + Sama_0732 0.86 +0.9
901,660 + Sama_0732 0.86 +0.9
901,660 + Sama_0732 0.86 -0.1
901,660 + Sama_0732 0.86 +1.7
901,660 + Sama_0732 0.86 +1.0
901,661 - Sama_0732 0.87 +0.9
901,661 - Sama_0732 0.87 +0.6
901,661 - Sama_0732 0.87 +1.4
901,661 - Sama_0732 0.87 +0.8
901,661 - Sama_0732 0.87 +1.2
901,661 - Sama_0732 0.87 +0.1
901,661 - Sama_0732 0.87 -0.1
901,661 - Sama_0732 0.87 +0.4
901,661 - Sama_0732 0.87 +2.2
901,661 - Sama_0732 0.87 +0.5
901,662 + Sama_0732 0.87 +0.4
901,662 + Sama_0732 0.87 +0.7
901,662 + Sama_0732 0.87 +0.1
901,662 + Sama_0732 0.87 -0.6
901,662 + Sama_0732 0.87 -0.3
901,662 + Sama_0732 0.87 -0.2
901,662 + Sama_0732 0.87 +1.5
901,662 + Sama_0732 0.87 -1.2
901,662 + Sama_0732 0.87 +1.0
901,662 + Sama_0732 0.87 -0.2
901,662 + Sama_0732 0.87 +1.0
901,662 + Sama_0732 0.87 -0.5
901,662 + Sama_0732 0.87 +1.2
901,662 + Sama_0732 0.87 +0.5
901,662 + Sama_0732 0.87 -2.7
901,662 + Sama_0732 0.87 -1.2
901,662 + Sama_0732 0.87 +1.4
901,662 + Sama_0732 0.87 +1.0
901,663 - Sama_0732 0.87 +0.2
901,663 - Sama_0732 0.87 +1.7
901,663 - Sama_0732 0.87 +0.4
901,663 - Sama_0732 0.87 +0.5
901,663 - Sama_0732 0.87 -1.0
901,663 - Sama_0732 0.87 +0.7
901,663 - Sama_0732 0.87 +0.8
901,663 - Sama_0732 0.87 -0.1
901,663 - Sama_0732 0.87 +0.9
901,663 - Sama_0732 0.87 -1.4
901,663 - Sama_0732 0.87 -0.2
901,663 - Sama_0732 0.87 +0.0
901,663 - Sama_0732 0.87 +0.7
901,663 - Sama_0732 0.87 +1.3
901,663 - Sama_0732 0.87 +2.0
901,663 - Sama_0732 0.87 -0.2
901,663 - Sama_0732 0.87 +0.4
901,663 - Sama_0732 0.87 +0.4
901,666 + Sama_0732 0.87 -0.3
901,667 - Sama_0732 0.87 +0.4
901,686 - Sama_0732 0.89 +0.7
901,686 - Sama_0732 0.89 +0.3
901,705 - +1.0
901,761 + +1.0
901,761 + -0.6
901,761 + +0.1
901,761 + -0.2
901,762 - +0.1
901,762 - +0.4
901,762 - +0.3
901,762 - -0.8
901,767 - +1.0
901,835 - -0.7
901,835 - -0.4
901,835 - -1.7
901,840 + -0.9
901,840 + -1.3
901,840 + -1.1
901,841 - -2.2

Or see this region's nucleotide sequence