Strain Fitness in Shewanella oneidensis MR-1 around SO4116

Experiment: Paraquat dichloride 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.25 mg/ml
4,274,178	+		SO4114.2	0.13	-0.6
4,274,214	+		SO4114.2	0.17	-0.2
4,274,239	+		SO4114.2	0.20	-0.2
4,274,319	-		SO4114.2	0.29	+0.0
4,274,330	+		SO4114.2	0.31	-0.2
4,274,338	-		SO4114.2	0.32	+0.4
4,274,338	-		SO4114.2	0.32	-0.2
4,274,338	-		SO4114.2	0.32	+0.1
4,274,381	-		SO4114.2	0.36	-0.4
4,274,425	-		SO4114.2	0.41	+0.3
4,274,468	+		SO4114.2	0.46	-0.5
4,274,468	+		SO4114.2	0.46	-0.5
4,274,468	+		SO4114.2	0.46	+0.1
4,274,468	+		SO4114.2	0.46	+0.3
4,274,468	+		SO4114.2	0.46	+0.3
4,274,468	+		SO4114.2	0.46	-0.6
4,274,476	-		SO4114.2	0.47	+0.6
4,274,476	-		SO4114.2	0.47	+1.3
4,274,476	-		SO4114.2	0.47	-0.9
4,274,476	-		SO4114.2	0.47	+1.1
4,274,504	+		SO4114.2	0.50	+0.1
4,274,561	+		SO4114.2	0.57	-2.0
4,274,562	-		SO4114.2	0.57	+0.2
4,274,566	+		SO4114.2	0.57	-0.3
4,274,571	+		SO4114.2	0.58	-0.4
4,274,579	-		SO4114.2	0.59	-0.3
4,274,636	-		SO4114.2	0.65	-0.3
4,274,651	-		SO4114.2	0.67	+0.3
4,274,651	-		SO4114.2	0.67	+0.1
4,274,747	-		SO4114.2	0.78	+0.0
4,274,852	-				+0.3
4,274,853	-				+0.5
4,274,873	-				-0.1
4,274,879	+				-0.4
4,274,879	+				-0.2
4,274,879	+				+0.0
4,274,879	+				-0.6
4,274,970	-				-0.2
4,275,180	+				-0.6
4,275,189	+				-0.5
4,275,220	-				-0.5
4,275,235	+				-1.1
4,275,236	-				-1.3
4,275,286	-				-0.9
4,275,301	+				-1.4
4,275,309	-				-1.4
4,275,374	-	mshH	SO4116	0.10	-2.4
4,275,444	+	mshH	SO4116	0.14	-0.6
4,275,449	+	mshH	SO4116	0.14	-2.8
4,275,452	-	mshH	SO4116	0.14	-1.8
4,275,457	-	mshH	SO4116	0.15	-1.2
4,275,457	-	mshH	SO4116	0.15	-1.7
4,275,457	-	mshH	SO4116	0.15	-1.2
4,275,457	-	mshH	SO4116	0.15	-1.7
4,275,469	-	mshH	SO4116	0.15	-0.5
4,275,469	-	mshH	SO4116	0.15	-1.2
4,275,493	-	mshH	SO4116	0.17	-1.8
4,275,493	-	mshH	SO4116	0.17	-1.3
4,275,630	+	mshH	SO4116	0.24	-1.4
4,275,646	-	mshH	SO4116	0.25	-1.4
4,275,660	+	mshH	SO4116	0.25	+0.5
4,275,668	-	mshH	SO4116	0.26	-1.8
4,275,760	+	mshH	SO4116	0.31	-1.8
4,275,760	+	mshH	SO4116	0.31	-0.7
4,275,810	+	mshH	SO4116	0.33	-0.6
4,275,818	-	mshH	SO4116	0.34	-2.1
4,275,818	-	mshH	SO4116	0.34	-2.7
4,275,907	-	mshH	SO4116	0.38	-0.6
4,275,972	+	mshH	SO4116	0.42	-1.1
4,275,985	-	mshH	SO4116	0.43	-0.6
4,276,011	+	mshH	SO4116	0.44	-2.5
4,276,051	-	mshH	SO4116	0.46	-0.0
4,276,092	-	mshH	SO4116	0.48	-1.2
4,276,131	+	mshH	SO4116	0.50	-1.7
4,276,136	+	mshH	SO4116	0.51	-0.8
4,276,144	-	mshH	SO4116	0.51	-0.2
4,276,144	-	mshH	SO4116	0.51	-1.3
4,276,150	+	mshH	SO4116	0.51	-0.9
4,276,260	-	mshH	SO4116	0.57	-0.7
4,276,260	-	mshH	SO4116	0.57	-0.8
4,276,260	-	mshH	SO4116	0.57	-0.7
4,276,260	-	mshH	SO4116	0.57	+0.1
4,276,340	+	mshH	SO4116	0.61	-1.3
4,276,340	+	mshH	SO4116	0.61	-2.0
4,276,365	-	mshH	SO4116	0.63	-0.9
4,276,405	+	mshH	SO4116	0.65	-2.7
4,276,461	-	mshH	SO4116	0.68	-0.8
4,276,498	-	mshH	SO4116	0.70	-1.2
4,276,528	-	mshH	SO4116	0.71	-1.1
4,276,711	+	mshH	SO4116	0.81	-1.7
4,276,765	-	mshH	SO4116	0.84	-0.5
4,276,771	+	mshH	SO4116	0.84	-0.9
4,276,779	-	mshH	SO4116	0.84	-0.0
4,276,839	-	mshH	SO4116	0.88	-0.6
4,276,924	-				-1.1
4,276,945	-				-1.4
4,276,945	-				-0.9
4,276,962	+				-0.7
4,277,137	-				-0.6
4,277,187	-				+0.1
4,277,290	+				-0.0
4,277,383	-				-1.0
4,277,417	+				-0.2
4,277,460	+		SO4118	0.13	-0.4
4,277,507	+		SO4118	0.16	+0.5
4,277,515	-		SO4118	0.17	-0.5
4,277,515	-		SO4118	0.17	-0.6
4,277,515	-		SO4118	0.17	-0.7
4,277,515	-		SO4118	0.17	-1.0
4,277,616	-		SO4118	0.25	+0.1
4,277,668	+		SO4118	0.29	+0.1
4,277,676	-		SO4118	0.30	-0.4
4,277,676	-		SO4118	0.30	+0.1
4,277,676	-		SO4118	0.30	-0.2
4,277,691	+		SO4118	0.31	+0.2
4,277,766	+		SO4118	0.37	+1.4
4,277,860	-		SO4118	0.45	+0.3
4,277,865	-		SO4118	0.45	+0.2
4,277,865	-		SO4118	0.45	-0.3
4,277,875	+		SO4118	0.46	-0.4
4,277,875	+		SO4118	0.46	-0.7
4,277,948	+		SO4118	0.52	+0.1
4,277,991	+		SO4118	0.55	-0.7