Strain Fitness in Shewanella oneidensis MR-1 around SO_1600

Experiment: Paraquat dichloride 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.25 mg/ml
1,675,379	+		SO1599	0.86	-0.9
1,675,434	+		SO1599	0.87	-1.3
1,675,503	+		SO1599	0.88	-0.5
1,675,534	+		SO1599	0.89	-0.5
1,675,534	+		SO1599	0.89	-1.2
1,675,539	+		SO1599	0.89	-1.3
1,676,126	+				-1.1
1,676,134	-				-2.6
1,676,166	+				-1.0
1,676,166	+				-0.5
1,676,174	-				-0.8
1,676,264	+				-2.2
1,676,371	+				-1.6
1,676,384	+				-2.7
1,676,519	+		SO_1600	0.13	-1.4
1,676,574	+		SO_1600	0.16	-0.4
1,676,574	+		SO_1600	0.16	-1.5
1,676,582	-		SO_1600	0.16	-0.5
1,676,582	-		SO_1600	0.16	-0.6
1,676,582	-		SO_1600	0.16	-1.4
1,676,582	-		SO_1600	0.16	-0.8
1,676,658	+		SO_1600	0.19	-1.9
1,676,658	+		SO_1600	0.19	-1.8
1,676,666	-		SO_1600	0.20	-0.2
1,676,666	-		SO_1600	0.20	-1.1
1,676,823	-		SO_1600	0.26	-0.9
1,676,827	+		SO_1600	0.26	-1.3
1,676,838	-		SO_1600	0.27	-0.6
1,676,886	+		SO_1600	0.29	-1.1
1,677,003	+		SO_1600	0.34	-2.2
1,677,044	+		SO_1600	0.36	-2.0
1,677,044	+		SO_1600	0.36	-1.0
1,677,052	-		SO_1600	0.36	-1.3
1,677,120	+		SO_1600	0.39	-0.4
1,677,214	+		SO_1600	0.43	-1.3
1,677,245	-		SO_1600	0.44	-0.3
1,677,297	+		SO_1600	0.46	-2.2
1,677,354	-		SO_1600	0.49	-0.2
1,677,374	+		SO_1600	0.50	-1.4
1,677,423	-		SO_1600	0.52	-0.7
1,677,425	-		SO_1600	0.52	-1.2
1,677,507	-		SO_1600	0.55	-1.6
1,677,512	+		SO_1600	0.55	-0.8
1,677,522	+		SO_1600	0.56	-0.9
1,677,529	+		SO_1600	0.56	-0.9
1,677,570	+		SO_1600	0.58	+0.1
1,677,592	+		SO_1600	0.59	-2.0
1,677,592	+		SO_1600	0.59	-1.9
1,677,733	+		SO_1600	0.65	-1.3
1,677,822	-		SO_1600	0.68	-1.3
1,677,822	-		SO_1600	0.68	-1.3
1,677,832	+				+0.7
1,677,838	+		SO_1600	0.69	-0.9
1,677,839	+		SO_1600	0.69	-1.1
1,677,840	-		SO_1600	0.69	-0.1
1,677,840	-		SO_1600	0.69	+1.3
1,677,847	-		SO_1600	0.70	-0.9
1,677,904	-		SO_1600	0.72	+0.6
1,677,942	+		SO_1600	0.74	-0.8
1,677,942	+		SO_1600	0.74	+0.4
1,678,228	+		SO_1600	0.86	+0.2
1,678,232	-		SO_1600	0.86	-2.6
1,678,263	-		SO_1600	0.87	-2.7
1,678,388	-				-1.1
1,678,442	+				-1.1
1,678,525	-				-0.8
1,678,549	+				-0.2
1,678,566	+				-0.8
1,678,566	+				-0.6
1,678,792	+				-1.2
1,678,792	+				-0.8
1,678,839	-				-1.0
1,678,871	+				-0.8
1,679,191	-				-0.7
1,679,202	+				-1.2
1,679,202	+				-0.6
1,679,210	-				-1.5
1,679,210	-				+0.1
1,679,210	-				-1.0
1,679,210	-				-1.2
1,679,217	-				-1.6
1,679,230	-				-1.0
1,679,235	-				-1.2
1,679,335	-		SO1602	0.10	-0.0
1,679,370	+		SO1602	0.11	+0.4
1,679,458	+		SO1602	0.12	-1.0
1,679,472	+		SO1602	0.12	-0.1