Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1656

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbcp and Shewana3_1655 are separated by 3 nucleotidesShewana3_1655 and Shewana3_1656 are separated by 172 nucleotidesShewana3_1656 and Shewana3_1657 are separated by 3 nucleotides Shewana3_1654: bcp - thioredoxin-dependent thiol peroxidase (RefSeq), at 1,945,084 to 1,945,551 bcp Shewana3_1655: Shewana3_1655 - glycine cleavage system transcriptional repressor, putative (RefSeq), at 1,945,555 to 1,946,106 _1655 Shewana3_1656: Shewana3_1656 - dihydrodipicolinate synthase (RefSeq), at 1,946,279 to 1,947,163 _1656 Shewana3_1657: Shewana3_1657 - NlpB/DapX family lipoprotein (RefSeq), at 1,947,167 to 1,948,264 _1657 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -1 0 1at 1945.399 kb on + strand, within bcpat 1945.399 kb on + strand, within bcpat 1945.407 kb on - strand, within bcpat 1945.417 kb on - strand, within bcpat 1945.417 kb on - strand, within bcpat 1945.704 kb on - strand, within Shewana3_1655at 1945.777 kb on - strand, within Shewana3_1655at 1945.788 kb on + strand, within Shewana3_1655at 1945.868 kb on - strand, within Shewana3_1655at 1945.960 kb on - strand, within Shewana3_1655at 1946.143 kb on + strandat 1946.174 kb on + strandat 1947.614 kb on + strand, within Shewana3_1657at 1947.959 kb on + strand, within Shewana3_1657at 1947.968 kb on + strand, within Shewana3_1657

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,945,399 + bcp Shewana3_1654 0.67 -0.7
1,945,399 + bcp Shewana3_1654 0.67 -0.3
1,945,407 - bcp Shewana3_1654 0.69 -0.4
1,945,417 - bcp Shewana3_1654 0.71 +0.3
1,945,417 - bcp Shewana3_1654 0.71 +0.5
1,945,704 - Shewana3_1655 0.27 -0.5
1,945,777 - Shewana3_1655 0.40 +0.1
1,945,788 + Shewana3_1655 0.42 -1.2
1,945,868 - Shewana3_1655 0.57 -0.7
1,945,960 - Shewana3_1655 0.73 -0.4
1,946,143 + -0.8
1,946,174 + +0.1
1,947,614 + Shewana3_1657 0.41 -1.1
1,947,959 + Shewana3_1657 0.72 -0.9
1,947,968 + Shewana3_1657 0.73 +0.1

Or see this region's nucleotide sequence