Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4441

Experiment: MBOA 0.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MBOA 0.5 mM
5,306,988	+		Psyr_4440	0.36	-0.1
5,306,989	-		Psyr_4440	0.36	+0.5
5,307,046	+		Psyr_4440	0.42	-0.6
5,307,100	+		Psyr_4440	0.48	+0.6
5,307,400	-		Psyr_4440	0.80	-0.1
5,307,400	-		Psyr_4440	0.80	+0.3
5,307,429	-		Psyr_4440	0.83	+2.7
5,307,435	+		Psyr_4440	0.83	-0.8
5,307,435	+		Psyr_4440	0.83	-1.2
5,307,435	+		Psyr_4440	0.83	-1.9
5,307,435	+		Psyr_4440	0.83	+0.4
5,307,436	-		Psyr_4440	0.83	+1.7
5,307,436	-		Psyr_4440	0.83	+0.2
5,307,498	+				+0.2
5,307,498	+				-0.1
5,307,498	+				+1.2
5,307,499	-				+0.2
5,307,499	-				+0.9
5,307,499	-				+0.8
5,307,499	-				-0.1
5,307,566	+				+0.0
5,307,566	+				-0.6
5,307,566	+				-1.1
5,307,566	+				-0.9
5,307,566	+				-1.7
5,307,566	+				+0.1
5,307,566	+				+0.4
5,307,566	+				+0.3
5,307,566	+				+0.1
5,307,566	+				-0.2
5,307,567	-				-1.4
5,307,567	-				-0.2
5,307,573	+				-1.2
5,307,573	+				+0.1
5,307,573	+				-0.2
5,307,573	+				-0.5
5,307,574	-				+0.6
5,307,574	-				-0.4
5,307,574	-				+1.1
5,307,576	+				+0.1
5,307,576	+				+0.8
5,307,577	-				-0.8
5,307,577	-				-1.0
5,307,594	+				+1.2
5,307,595	-				-0.7
5,307,631	+				+0.8
5,307,632	-				+0.0
5,307,680	-				+0.8
5,307,683	+				-0.6
5,307,684	-				+0.1
5,307,696	+				-1.8
5,307,696	+				+0.3
5,307,698	+				-0.7
5,307,699	-				+0.2
5,307,704	+				-0.9
5,307,704	+				-0.1
5,307,705	-				+0.4
5,307,733	+				+0.1
5,307,746	+				-0.9
5,307,746	+				-2.7
5,307,746	+				-0.7
5,307,746	+				-0.1
5,307,746	+				-0.4
5,307,746	+				+1.4
5,307,746	+				+0.6
5,307,746	+				+0.6
5,307,746	+				-2.8
5,307,746	+				-0.8
5,307,746	+				-1.4
5,307,746	+				+0.4
5,307,746	+				+1.1
5,307,746	+				+0.3
5,307,746	+				-0.3
5,307,747	-				-0.1
5,307,747	-				+0.5
5,307,747	-				+0.2
5,307,747	-				-1.4
5,307,747	-				-0.4
5,307,747	-				-1.1
5,307,747	-				-0.1
5,307,747	-				+1.2
5,307,779	+				-2.9
5,307,780	-				-2.1
5,307,825	+				-0.6
5,307,825	+				+0.3
5,307,826	-				-0.7
5,307,835	+				+1.8
5,307,836	-				-0.4
5,307,836	-				-2.2
5,307,836	-				+0.6
5,307,836	-				+0.5
5,307,836	-				+0.6
5,307,839	+				+0.4
5,307,839	+				+0.0
5,307,839	+				-1.0
5,307,839	+				+1.2
5,307,839	+				+0.3
5,307,839	+				-0.2
5,307,839	+				-1.7
5,307,839	+				-1.1
5,307,840	-				+0.2
5,307,840	-				+1.3
5,307,840	-				+1.2
5,307,840	-				+1.5
5,307,840	-				-1.2
5,307,840	-				-0.1
5,307,840	-				+0.2
5,307,840	-				+2.2
5,307,840	-				-1.4
5,307,840	-				-2.4
5,307,841	+				+1.2
5,307,842	-				-0.4
5,307,842	-				-0.0
5,307,842	-				+0.2
5,307,881	+				-0.9
5,307,881	+				-1.8
5,307,881	+				-0.8
5,307,881	+				-0.4
5,307,912	+				-1.0
5,307,912	+				-0.8
5,307,912	+				-1.1
5,307,913	-				-0.1
5,307,913	-				-0.9
5,307,913	-				+0.7
5,307,913	-				+1.1
5,308,037	-				+0.8
5,308,086	-		Psyr_4441	0.13	+1.4
5,308,086	-		Psyr_4441	0.13	-0.9
5,308,121	+		Psyr_4441	0.16	-0.4
5,308,122	-		Psyr_4441	0.16	+0.2
5,308,122	-		Psyr_4441	0.16	-0.4
5,308,122	-		Psyr_4441	0.16	-1.3
5,308,667	+		Psyr_4441	0.59	+1.7
5,308,667	+		Psyr_4441	0.59	+0.9
5,308,667	+		Psyr_4441	0.59	+0.5
5,308,667	+		Psyr_4441	0.59	+0.5
5,308,667	+		Psyr_4441	0.59	-0.4
5,308,667	+		Psyr_4441	0.59	+0.5
5,308,667	+		Psyr_4441	0.59	-0.4
5,308,667	+		Psyr_4441	0.59	+1.0
5,308,667	+		Psyr_4441	0.59	-0.5
5,308,667	+		Psyr_4441	0.59	+0.4
5,308,667	+		Psyr_4441	0.59	+0.1
5,308,668	-		Psyr_4441	0.59	+1.8
5,308,668	-		Psyr_4441	0.59	-2.2
5,308,668	-		Psyr_4441	0.59	+1.2
5,308,668	-		Psyr_4441	0.59	+0.1
5,308,668	-		Psyr_4441	0.59	+0.8
5,308,668	-		Psyr_4441	0.59	-0.3
5,308,668	-		Psyr_4441	0.59	-0.1
5,308,668	-		Psyr_4441	0.59	+0.4
5,308,668	-		Psyr_4441	0.59	+0.4
5,308,668	-		Psyr_4441	0.59	-2.6
5,308,668	-		Psyr_4441	0.59	-0.3
5,308,668	-		Psyr_4441	0.59	-0.3
5,308,687	+		Psyr_4441	0.61	+0.4
5,308,687	+		Psyr_4441	0.61	-0.7
5,308,687	+		Psyr_4441	0.61	-0.1
5,308,687	+		Psyr_4441	0.61	+1.9
5,308,688	-		Psyr_4441	0.61	+0.8
5,308,688	-		Psyr_4441	0.61	+0.2
5,308,688	-		Psyr_4441	0.61	+0.1
5,308,688	-		Psyr_4441	0.61	+0.7
5,308,688	-		Psyr_4441	0.61	+0.7
5,308,688	-		Psyr_4441	0.61	-0.2
5,308,688	-		Psyr_4441	0.61	+0.6
5,308,724	+		Psyr_4441	0.64	-0.1
5,308,725	-		Psyr_4441	0.64	-0.1
5,308,763	+		Psyr_4441	0.67	+0.3
5,309,184	-				+0.3
5,309,275	+				-0.1
5,309,384	+				-0.8
5,309,384	+				+0.6
5,309,384	+				-1.1
5,309,385	-				-0.4
5,309,385	-				+0.4
5,309,427	+				+0.0
5,309,447	+				-0.1
5,309,448	-				+0.0
5,309,448	-				+1.0
5,309,451	+				-1.8
5,309,451	+				-0.5
5,309,451	+				-0.1
5,309,451	+				-0.6
5,309,451	+				+1.2
5,309,451	+				-0.3
5,309,451	+				+0.1
5,309,451	+				-0.3
5,309,451	+				-0.1
5,309,451	+				-0.5
5,309,451	+				+1.5
5,309,451	+				+1.0
5,309,451	+				+0.2
5,309,451	+				-0.7
5,309,451	+				-0.5
5,309,452	-				+0.1
5,309,452	-				+2.1
5,309,452	-				+0.3
5,309,452	-				-0.6
5,309,452	-				+0.1
5,309,452	-				+0.3
5,309,452	-				+0.0
5,309,452	-				+0.9
5,309,452	-				-0.6
5,309,500	+				+1.5
5,309,501	-				-0.2
5,309,501	-				+0.1
5,309,501	-				+0.1
5,309,501	-				-0.2
5,309,501	-				-0.3
5,309,501	-				+0.2
5,309,506	+				-0.1
5,309,506	+				-0.1
5,309,506	+				-0.1
5,309,507	-				-0.1
5,309,507	-				-0.6
5,309,509	+				+0.9
5,309,509	+				-1.1
5,309,509	+				+0.8
5,309,509	+				-0.2
5,309,509	+				-0.4
5,309,509	+				-0.4
5,309,510	-				+1.6
5,309,510	-				-1.0
5,309,629	+		Psyr_4442	0.16	-0.4
5,309,629	+		Psyr_4442	0.16	-1.9
5,309,630	-		Psyr_4442	0.17	-0.5
5,309,630	-		Psyr_4442	0.17	+0.3
5,309,630	-		Psyr_4442	0.17	+0.3
5,309,630	-		Psyr_4442	0.17	-0.4
5,309,630	-		Psyr_4442	0.17	-0.9
5,309,630	-		Psyr_4442	0.17	-0.7
5,309,630	-		Psyr_4442	0.17	+1.5
5,309,832	+		Psyr_4442	0.36	+1.4
5,309,840	+		Psyr_4442	0.37	+1.6
5,309,840	+		Psyr_4442	0.37	-0.4
5,309,840	+		Psyr_4442	0.37	-1.5
5,309,841	-		Psyr_4442	0.37	+0.5
5,309,841	-		Psyr_4442	0.37	-0.5
5,309,841	-		Psyr_4442	0.37	-1.1
5,309,911	+		Psyr_4442	0.44	-0.9
5,309,966	+		Psyr_4442	0.50	-0.7
5,309,967	-		Psyr_4442	0.50	+0.0
5,309,967	-		Psyr_4442	0.50	-0.1
5,309,967	-		Psyr_4442	0.50	-2.3
5,310,121	+		Psyr_4442	0.65	-1.4
5,310,121	+		Psyr_4442	0.65	-1.0
5,310,121	+		Psyr_4442	0.65	-0.9
5,310,121	+		Psyr_4442	0.65	+2.6
5,310,121	+		Psyr_4442	0.65	+0.3