Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0243

Experiment: DMSO

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0241 and Psyr_0242 are separated by 47 nucleotidesPsyr_0242 and Psyr_0243 are separated by 81 nucleotidesPsyr_0243 and Psyr_0244 are separated by 116 nucleotides Psyr_0241: Psyr_0241 - conserved hypothetical protein, at 253,210 to 255,141 _0241 Psyr_0242: Psyr_0242 - Protein of unknown function DUF962, at 255,189 to 255,713 _0242 Psyr_0243: Psyr_0243 - cyclic nucleotide-binding protein, at 255,795 to 256,505 _0243 Psyr_0244: Psyr_0244 - extracellular solute-binding protein, family 1, at 256,622 to 257,623 _0244 Position (kb) 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.088 kb on + strandat 255.089 kb on - strandat 255.089 kb on - strandat 255.089 kb on - strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.190 kb on + strandat 255.191 kb on - strandat 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.358 kb on + strand, within Psyr_0242at 255.359 kb on - strand, within Psyr_0242at 255.361 kb on + strand, within Psyr_0242at 255.361 kb on + strand, within Psyr_0242at 255.362 kb on - strand, within Psyr_0242at 255.465 kb on - strand, within Psyr_0242at 255.465 kb on - strand, within Psyr_0242at 255.520 kb on + strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.521 kb on - strand, within Psyr_0242at 255.653 kb on + strand, within Psyr_0242at 255.654 kb on - strand, within Psyr_0242at 255.673 kb on + strandat 255.674 kb on - strandat 255.714 kb on + strandat 255.714 kb on + strandat 255.718 kb on - strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.760 kb on + strandat 255.838 kb on - strandat 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.954 kb on + strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 255.955 kb on - strand, within Psyr_0243at 256.167 kb on + strand, within Psyr_0243at 256.387 kb on + strand, within Psyr_0243at 256.388 kb on - strand, within Psyr_0243at 256.388 kb on - strand, within Psyr_0243at 256.569 kb on - strandat 256.665 kb on + strandat 256.666 kb on - strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.706 kb on + strandat 256.707 kb on - strandat 256.707 kb on - strandat 256.707 kb on - strandat 256.707 kb on - strandat 256.751 kb on + strand, within Psyr_0244at 256.751 kb on + strand, within Psyr_0244at 256.752 kb on - strand, within Psyr_0244at 256.752 kb on - strand, within Psyr_0244at 256.901 kb on - strand, within Psyr_0244at 256.953 kb on - strand, within Psyr_0244at 257.009 kb on + strand, within Psyr_0244at 257.010 kb on - strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.048 kb on + strand, within Psyr_0244at 257.049 kb on - strand, within Psyr_0244at 257.049 kb on - strand, within Psyr_0244at 257.049 kb on - strand, within Psyr_0244at 257.111 kb on + strand, within Psyr_0244at 257.111 kb on + strand, within Psyr_0244at 257.111 kb on + strand, within Psyr_0244at 257.112 kb on - strand, within Psyr_0244at 257.112 kb on - strand, within Psyr_0244at 257.112 kb on - strand, within Psyr_0244at 257.112 kb on - strand, within Psyr_0244at 257.132 kb on - strand, within Psyr_0244at 257.280 kb on - strand, within Psyr_0244at 257.282 kb on + strand, within Psyr_0244at 257.282 kb on + strand, within Psyr_0244at 257.282 kb on + strand, within Psyr_0244at 257.283 kb on - strand, within Psyr_0244at 257.283 kb on - strand, within Psyr_0244at 257.283 kb on - strand, within Psyr_0244at 257.285 kb on + strand, within Psyr_0244at 257.285 kb on + strand, within Psyr_0244at 257.285 kb on + strand, within Psyr_0244at 257.285 kb on + strand, within Psyr_0244at 257.285 kb on - strand, within Psyr_0244at 257.286 kb on - strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.393 kb on + strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244at 257.394 kb on - strand, within Psyr_0244

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO
remove
255,088 + +0.1
255,088 + -0.7
255,088 + -1.2
255,088 + -0.8
255,088 + +0.7
255,089 - -2.1
255,089 - +1.4
255,089 - +0.1
255,190 + -0.9
255,190 + +0.1
255,190 + +1.5
255,190 + +0.1
255,191 - -0.0
255,358 + Psyr_0242 0.32 -0.6
255,358 + Psyr_0242 0.32 -0.4
255,358 + Psyr_0242 0.32 +0.3
255,358 + Psyr_0242 0.32 -0.5
255,359 - Psyr_0242 0.32 -0.0
255,361 + Psyr_0242 0.33 +0.8
255,361 + Psyr_0242 0.33 -0.2
255,362 - Psyr_0242 0.33 -0.5
255,465 - Psyr_0242 0.53 +0.1
255,465 - Psyr_0242 0.53 +0.4
255,520 + Psyr_0242 0.63 +0.2
255,521 - Psyr_0242 0.63 +0.2
255,521 - Psyr_0242 0.63 -3.1
255,521 - Psyr_0242 0.63 -1.2
255,521 - Psyr_0242 0.63 +0.1
255,653 + Psyr_0242 0.88 +0.3
255,654 - Psyr_0242 0.89 +1.0
255,673 + +0.2
255,674 - -0.6
255,714 + -0.6
255,714 + -0.1
255,718 - -0.3
255,760 + +1.1
255,760 + -0.1
255,760 + +0.4
255,760 + -0.4
255,838 - -0.3
255,954 + Psyr_0243 0.22 -0.0
255,954 + Psyr_0243 0.22 +0.1
255,954 + Psyr_0243 0.22 +0.4
255,954 + Psyr_0243 0.22 -1.2
255,954 + Psyr_0243 0.22 +0.0
255,955 - Psyr_0243 0.23 -0.8
255,955 - Psyr_0243 0.23 +0.4
255,955 - Psyr_0243 0.23 +1.3
255,955 - Psyr_0243 0.23 -0.8
255,955 - Psyr_0243 0.23 +1.4
255,955 - Psyr_0243 0.23 +1.6
255,955 - Psyr_0243 0.23 +1.0
256,167 + Psyr_0243 0.52 -0.3
256,387 + Psyr_0243 0.83 -0.5
256,388 - Psyr_0243 0.83 +1.4
256,388 - Psyr_0243 0.83 +1.0
256,569 - -0.3
256,665 + +0.2
256,666 - -0.2
256,706 + +0.7
256,706 + +0.3
256,706 + -1.0
256,706 + -0.9
256,706 + +0.9
256,706 + +0.2
256,706 + -0.5
256,706 + -0.0
256,706 + -0.9
256,706 + -1.5
256,707 - -1.5
256,707 - +0.3
256,707 - +0.4
256,707 - +0.7
256,751 + Psyr_0244 0.13 +0.2
256,751 + Psyr_0244 0.13 -0.7
256,752 - Psyr_0244 0.13 -1.1
256,752 - Psyr_0244 0.13 +0.8
256,901 - Psyr_0244 0.28 +1.0
256,953 - Psyr_0244 0.33 -0.1
257,009 + Psyr_0244 0.39 +0.8
257,010 - Psyr_0244 0.39 +0.9
257,048 + Psyr_0244 0.43 -0.2
257,048 + Psyr_0244 0.43 +0.5
257,048 + Psyr_0244 0.43 -0.2
257,048 + Psyr_0244 0.43 -0.7
257,048 + Psyr_0244 0.43 -0.9
257,048 + Psyr_0244 0.43 +0.4
257,049 - Psyr_0244 0.43 +3.1
257,049 - Psyr_0244 0.43 -0.6
257,049 - Psyr_0244 0.43 -0.1
257,111 + Psyr_0244 0.49 -0.4
257,111 + Psyr_0244 0.49 +0.1
257,111 + Psyr_0244 0.49 -0.5
257,112 - Psyr_0244 0.49 +0.3
257,112 - Psyr_0244 0.49 +0.1
257,112 - Psyr_0244 0.49 +0.6
257,112 - Psyr_0244 0.49 -0.5
257,132 - Psyr_0244 0.51 +0.2
257,280 - Psyr_0244 0.66 +0.2
257,282 + Psyr_0244 0.66 +0.5
257,282 + Psyr_0244 0.66 -1.5
257,282 + Psyr_0244 0.66 -0.2
257,283 - Psyr_0244 0.66 +1.3
257,283 - Psyr_0244 0.66 -0.1
257,283 - Psyr_0244 0.66 +0.6
257,285 + Psyr_0244 0.66 -1.7
257,285 + Psyr_0244 0.66 +1.4
257,285 + Psyr_0244 0.66 -0.8
257,285 + Psyr_0244 0.66 +0.2
257,285 - Psyr_0244 0.66 -0.0
257,286 - Psyr_0244 0.66 -0.5
257,393 + Psyr_0244 0.77 -0.3
257,393 + Psyr_0244 0.77 -0.7
257,393 + Psyr_0244 0.77 -0.9
257,393 + Psyr_0244 0.77 +0.4
257,393 + Psyr_0244 0.77 -0.7
257,394 - Psyr_0244 0.77 -0.3
257,394 - Psyr_0244 0.77 +2.7
257,394 - Psyr_0244 0.77 -0.2
257,394 - Psyr_0244 0.77 -0.5
257,394 - Psyr_0244 0.77 -0.6
257,394 - Psyr_0244 0.77 +0.5
257,394 - Psyr_0244 0.77 -0.3

Or see this region's nucleotide sequence