Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0139

Experiment: Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0138 and DVUA0139 are separated by 163 nucleotidesDVUA0139 and DVUA0141 are separated by 307 nucleotides DVUA0138: DVUA0138 - sensor histidine kinase (TIGR), at 179,417 to 181,501 DVUA0138 DVUA0139: DVUA0139 - outer membrane autotransporter barrel domain protein (TIGR), at 181,665 to 183,644 DVUA0139 DVUA0141: DVUA0141 - hypothetical protein (TIGR), at 183,952 to 184,188 DVUA0141 Position (kb) 181 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 180.699 kb on + strand, within DVUA0138at 180.712 kb on - strand, within DVUA0138at 180.722 kb on - strand, within DVUA0138at 180.729 kb on - strand, within DVUA0138at 180.740 kb on + strand, within DVUA0138at 180.762 kb on + strand, within DVUA0138at 180.763 kb on - strand, within DVUA0138at 180.789 kb on + strand, within DVUA0138at 180.791 kb on + strand, within DVUA0138at 180.815 kb on - strand, within DVUA0138at 180.826 kb on + strand, within DVUA0138at 180.830 kb on - strand, within DVUA0138at 180.834 kb on - strand, within DVUA0138at 180.839 kb on - strand, within DVUA0138at 180.848 kb on + strand, within DVUA0138at 180.915 kb on - strand, within DVUA0138at 180.951 kb on - strand, within DVUA0138at 180.971 kb on + strand, within DVUA0138at 181.001 kb on - strand, within DVUA0138at 181.054 kb on + strand, within DVUA0138at 181.060 kb on + strand, within DVUA0138at 181.068 kb on - strand, within DVUA0138at 181.083 kb on - strand, within DVUA0138at 181.117 kb on - strand, within DVUA0138at 181.129 kb on + strand, within DVUA0138at 181.249 kb on + strand, within DVUA0138at 181.249 kb on + strand, within DVUA0138at 181.249 kb on + strand, within DVUA0138at 181.249 kb on + strand, within DVUA0138at 181.257 kb on - strand, within DVUA0138at 181.257 kb on - strand, within DVUA0138at 181.257 kb on - strand, within DVUA0138at 181.257 kb on - strand, within DVUA0138at 181.272 kb on - strand, within DVUA0138at 181.334 kb on + strandat 181.389 kb on + strandat 181.424 kb on - strandat 181.496 kb on + strandat 181.580 kb on - strandat 181.621 kb on + strandat 181.636 kb on - strandat 181.642 kb on - strandat 181.659 kb on - strandat 181.713 kb on + strandat 181.736 kb on + strandat 181.876 kb on - strand, within DVUA0139at 181.933 kb on + strand, within DVUA0139at 181.968 kb on - strand, within DVUA0139at 181.981 kb on + strand, within DVUA0139at 182.005 kb on + strand, within DVUA0139at 182.074 kb on - strand, within DVUA0139at 182.103 kb on - strand, within DVUA0139at 182.184 kb on + strand, within DVUA0139at 182.216 kb on - strand, within DVUA0139at 182.229 kb on + strand, within DVUA0139at 182.237 kb on - strand, within DVUA0139at 182.267 kb on + strand, within DVUA0139at 182.297 kb on + strand, within DVUA0139at 182.394 kb on + strand, within DVUA0139at 182.397 kb on - strand, within DVUA0139at 182.404 kb on + strand, within DVUA0139at 182.404 kb on + strand, within DVUA0139at 182.411 kb on + strand, within DVUA0139at 182.538 kb on + strand, within DVUA0139at 182.538 kb on + strand, within DVUA0139at 182.546 kb on - strand, within DVUA0139at 182.578 kb on + strand, within DVUA0139at 182.622 kb on - strand, within DVUA0139at 182.716 kb on + strand, within DVUA0139at 182.718 kb on + strand, within DVUA0139at 182.738 kb on + strand, within DVUA0139at 182.845 kb on + strand, within DVUA0139at 182.850 kb on + strand, within DVUA0139at 182.853 kb on - strand, within DVUA0139at 182.873 kb on + strand, within DVUA0139at 182.873 kb on + strand, within DVUA0139at 182.881 kb on - strand, within DVUA0139at 182.905 kb on - strand, within DVUA0139at 182.905 kb on - strand, within DVUA0139at 182.996 kb on + strand, within DVUA0139at 183.004 kb on - strand, within DVUA0139at 183.054 kb on - strand, within DVUA0139at 183.054 kb on - strand, within DVUA0139at 183.054 kb on - strand, within DVUA0139at 183.054 kb on - strand, within DVUA0139at 183.099 kb on + strand, within DVUA0139at 183.108 kb on - strand, within DVUA0139at 183.115 kb on + strand, within DVUA0139at 183.196 kb on + strand, within DVUA0139at 183.352 kb on + strand, within DVUA0139at 183.360 kb on - strand, within DVUA0139at 183.360 kb on - strand, within DVUA0139at 183.431 kb on - strand, within DVUA0139at 183.694 kb on - strandat 184.031 kb on - strand, within DVUA0141at 184.133 kb on + strand, within DVUA0141at 184.156 kb on - strand, within DVUA0141at 184.317 kb on + strandat 184.325 kb on - strandat 184.348 kb on + strandat 184.348 kb on + strandat 184.391 kb on - strandat 184.497 kb on - strandat 184.583 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrogen/Acetate-Thiosulfate (90%atm/5mM-20mM) with 0.1% Yeast Extract
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180,699 + DVUA0138 0.61 +0.2
180,712 - DVUA0138 0.62 -0.1
180,722 - DVUA0138 0.63 -0.3
180,729 - DVUA0138 0.63 +0.1
180,740 + DVUA0138 0.63 -0.3
180,762 + DVUA0138 0.65 -2.1
180,763 - DVUA0138 0.65 -0.6
180,789 + DVUA0138 0.66 +0.2
180,791 + DVUA0138 0.66 +0.3
180,815 - DVUA0138 0.67 +0.3
180,826 + DVUA0138 0.68 +0.5
180,830 - DVUA0138 0.68 +1.2
180,834 - DVUA0138 0.68 -0.1
180,839 - DVUA0138 0.68 +0.4
180,848 + DVUA0138 0.69 -0.2
180,915 - DVUA0138 0.72 +0.1
180,951 - DVUA0138 0.74 -0.0
180,971 + DVUA0138 0.75 +0.5
181,001 - DVUA0138 0.76 +0.1
181,054 + DVUA0138 0.79 +0.5
181,060 + DVUA0138 0.79 +0.1
181,068 - DVUA0138 0.79 +0.1
181,083 - DVUA0138 0.80 -0.2
181,117 - DVUA0138 0.82 +2.5
181,129 + DVUA0138 0.82 -0.3
181,249 + DVUA0138 0.88 +0.5
181,249 + DVUA0138 0.88 +0.2
181,249 + DVUA0138 0.88 +0.1
181,249 + DVUA0138 0.88 +0.2
181,257 - DVUA0138 0.88 -0.2
181,257 - DVUA0138 0.88 +0.3
181,257 - DVUA0138 0.88 -0.3
181,257 - DVUA0138 0.88 +0.8
181,272 - DVUA0138 0.89 +0.1
181,334 + +1.1
181,389 + -0.8
181,424 - +0.1
181,496 + -0.2
181,580 - +0.9
181,621 + +0.8
181,636 - +1.4
181,642 - -0.9
181,659 - -0.1
181,713 + -2.8
181,736 + -0.6
181,876 - DVUA0139 0.11 -0.0
181,933 + DVUA0139 0.14 -0.1
181,968 - DVUA0139 0.15 -1.8
181,981 + DVUA0139 0.16 +3.2
182,005 + DVUA0139 0.17 +0.1
182,074 - DVUA0139 0.21 +2.6
182,103 - DVUA0139 0.22 +0.2
182,184 + DVUA0139 0.26 -0.7
182,216 - DVUA0139 0.28 -0.2
182,229 + DVUA0139 0.28 -0.1
182,237 - DVUA0139 0.29 -0.1
182,267 + DVUA0139 0.30 -0.0
182,297 + DVUA0139 0.32 -0.0
182,394 + DVUA0139 0.37 -0.5
182,397 - DVUA0139 0.37 +0.4
182,404 + DVUA0139 0.37 +0.2
182,404 + DVUA0139 0.37 +0.3
182,411 + DVUA0139 0.38 -1.2
182,538 + DVUA0139 0.44 +0.7
182,538 + DVUA0139 0.44 -0.9
182,546 - DVUA0139 0.44 -1.2
182,578 + DVUA0139 0.46 -0.3
182,622 - DVUA0139 0.48 +0.9
182,716 + DVUA0139 0.53 +0.1
182,718 + DVUA0139 0.53 -0.2
182,738 + DVUA0139 0.54 +0.2
182,845 + DVUA0139 0.60 -0.4
182,850 + DVUA0139 0.60 +0.2
182,853 - DVUA0139 0.60 +0.2
182,873 + DVUA0139 0.61 -0.1
182,873 + DVUA0139 0.61 +0.1
182,881 - DVUA0139 0.61 +0.2
182,905 - DVUA0139 0.63 +0.4
182,905 - DVUA0139 0.63 -0.3
182,996 + DVUA0139 0.67 -0.8
183,004 - DVUA0139 0.68 +0.2
183,054 - DVUA0139 0.70 -0.3
183,054 - DVUA0139 0.70 +0.3
183,054 - DVUA0139 0.70 +0.4
183,054 - DVUA0139 0.70 +2.3
183,099 + DVUA0139 0.72 -0.5
183,108 - DVUA0139 0.73 -0.0
183,115 + DVUA0139 0.73 +0.0
183,196 + DVUA0139 0.77 -2.1
183,352 + DVUA0139 0.85 +0.8
183,360 - DVUA0139 0.86 -0.0
183,360 - DVUA0139 0.86 -0.0
183,431 - DVUA0139 0.89 -0.2
183,694 - +0.3
184,031 - DVUA0141 0.33 -0.0
184,133 + DVUA0141 0.76 -0.4
184,156 - DVUA0141 0.86 +0.1
184,317 + +0.2
184,325 - +0.3
184,348 + -0.2
184,348 + -0.0
184,391 - +2.1
184,497 - +0.3
184,583 + +0.1

Or see this region's nucleotide sequence