Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0636

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0635 and Psest_0636 are separated by 2 nucleotidesPsest_0636 and Psest_0637 are separated by 83 nucleotidesPsest_0637 and Psest_0638 are separated by 10 nucleotides Psest_0635: Psest_0635 - ATP-dependent helicase HrpB, at 689,487 to 691,637 _0635 Psest_0636: Psest_0636 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 691,640 to 692,455 _0636 Psest_0637: Psest_0637 - Short-chain dehydrogenases of various substrate specificities, at 692,539 to 693,369 _0637 Psest_0638: Psest_0638 - Predicted lactoylglutathione lyase, at 693,380 to 693,808 _0638 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.840 kb on + strand, within Psest_0635at 690.840 kb on + strand, within Psest_0635at 690.841 kb on - strand, within Psest_0635at 690.841 kb on - strand, within Psest_0635at 690.868 kb on + strand, within Psest_0635at 690.868 kb on + strand, within Psest_0635at 690.869 kb on - strand, within Psest_0635at 691.210 kb on - strand, within Psest_0635at 691.362 kb on + strand, within Psest_0635at 691.362 kb on + strand, within Psest_0635at 691.362 kb on + strand, within Psest_0635at 691.363 kb on - strand, within Psest_0635at 691.363 kb on - strand, within Psest_0635at 691.363 kb on - strand, within Psest_0635at 691.530 kb on + strandat 691.530 kb on + strandat 691.530 kb on + strandat 691.531 kb on - strandat 691.531 kb on - strandat 691.531 kb on - strandat 691.636 kb on - strandat 691.845 kb on + strand, within Psest_0636at 691.846 kb on - strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.957 kb on - strand, within Psest_0636at 691.957 kb on - strand, within Psest_0636at 692.024 kb on - strand, within Psest_0636at 692.037 kb on + strand, within Psest_0636at 692.038 kb on - strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.066 kb on - strand, within Psest_0636at 692.066 kb on - strand, within Psest_0636at 692.083 kb on + strand, within Psest_0636at 692.084 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.286 kb on + strand, within Psest_0636at 692.286 kb on + strand, within Psest_0636at 692.370 kb on + strand, within Psest_0636at 692.483 kb on + strandat 692.485 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.552 kb on + strandat 692.552 kb on + strandat 692.552 kb on + strandat 692.553 kb on - strandat 692.553 kb on - strandat 692.553 kb on - strandat 692.567 kb on + strandat 692.568 kb on - strandat 692.909 kb on - strandat 692.995 kb on + strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 693.022 kb on + strand, within Psest_0637at 693.092 kb on + strand, within Psest_0637at 693.092 kb on + strand, within Psest_0637at 693.093 kb on - strand, within Psest_0637at 693.119 kb on - strand, within Psest_0637at 693.121 kb on - strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.391 kb on + strandat 693.418 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
690,836 + Psest_0635 0.63 -0.1
690,836 + Psest_0635 0.63 +0.1
690,836 + Psest_0635 0.63 -0.2
690,836 + Psest_0635 0.63 +1.4
690,836 + Psest_0635 0.63 -1.0
690,836 + Psest_0635 0.63 +1.8
690,836 + Psest_0635 0.63 -3.1
690,836 + Psest_0635 0.63 -1.4
690,836 + Psest_0635 0.63 +0.0
690,836 + Psest_0635 0.63 -1.4
690,836 + Psest_0635 0.63 +0.5
690,836 + Psest_0635 0.63 -1.0
690,836 + Psest_0635 0.63 +0.9
690,836 + Psest_0635 0.63 -2.4
690,836 + Psest_0635 0.63 -1.3
690,837 - Psest_0635 0.63 +0.5
690,837 - Psest_0635 0.63 -1.0
690,837 - Psest_0635 0.63 -0.9
690,837 - Psest_0635 0.63 -0.5
690,837 - Psest_0635 0.63 +1.5
690,837 - Psest_0635 0.63 -1.7
690,837 - Psest_0635 0.63 -1.2
690,837 - Psest_0635 0.63 -1.1
690,837 - Psest_0635 0.63 +0.9
690,837 - Psest_0635 0.63 -0.1
690,837 - Psest_0635 0.63 -2.1
690,837 - Psest_0635 0.63 -0.2
690,837 - Psest_0635 0.63 -0.0
690,837 - Psest_0635 0.63 -0.3
690,837 - Psest_0635 0.63 +0.2
690,837 - Psest_0635 0.63 +0.2
690,837 - Psest_0635 0.63 -0.3
690,837 - Psest_0635 0.63 +0.7
690,837 - Psest_0635 0.63 +0.7
690,840 + Psest_0635 0.63 -0.1
690,840 + Psest_0635 0.63 -0.2
690,841 - Psest_0635 0.63 -1.5
690,841 - Psest_0635 0.63 +1.0
690,868 + Psest_0635 0.64 -0.8
690,868 + Psest_0635 0.64 +1.9
690,869 - Psest_0635 0.64 -0.4
691,210 - Psest_0635 0.80 -1.7
691,362 + Psest_0635 0.87 -0.4
691,362 + Psest_0635 0.87 +0.6
691,362 + Psest_0635 0.87 -0.9
691,363 - Psest_0635 0.87 -0.8
691,363 - Psest_0635 0.87 -0.2
691,363 - Psest_0635 0.87 -0.1
691,530 + -0.6
691,530 + +0.4
691,530 + -0.4
691,531 - +0.4
691,531 - +0.9
691,531 - +0.1
691,636 - -1.4
691,845 + Psest_0636 0.25 -1.0
691,846 - Psest_0636 0.25 +1.3
691,956 + Psest_0636 0.39 -1.0
691,956 + Psest_0636 0.39 +0.4
691,956 + Psest_0636 0.39 +1.1
691,957 - Psest_0636 0.39 -0.6
691,957 - Psest_0636 0.39 -1.2
692,024 - Psest_0636 0.47 -1.1
692,037 + Psest_0636 0.49 -1.2
692,038 - Psest_0636 0.49 -0.3
692,065 + Psest_0636 0.52 -0.2
692,065 + Psest_0636 0.52 -0.9
692,065 + Psest_0636 0.52 +0.5
692,065 + Psest_0636 0.52 +0.4
692,066 - Psest_0636 0.52 -0.3
692,066 - Psest_0636 0.52 -1.4
692,083 + Psest_0636 0.54 -0.7
692,084 - Psest_0636 0.54 +0.9
692,155 - Psest_0636 0.63 -1.5
692,155 - Psest_0636 0.63 +0.5
692,155 - Psest_0636 0.63 -0.9
692,265 + Psest_0636 0.77 -0.9
692,265 + Psest_0636 0.77 +0.3
692,265 + Psest_0636 0.77 -1.0
692,265 + Psest_0636 0.77 +0.1
692,266 - Psest_0636 0.77 -0.1
692,266 - Psest_0636 0.77 -2.4
692,266 - Psest_0636 0.77 +0.1
692,266 - Psest_0636 0.77 -1.2
692,286 + Psest_0636 0.79 +0.9
692,286 + Psest_0636 0.79 +0.6
692,370 + Psest_0636 0.89 +0.7
692,483 + +0.7
692,485 + +0.5
692,493 + -1.6
692,493 + -1.0
692,493 + +0.7
692,493 + +0.2
692,493 + +0.6
692,493 + -0.6
692,493 + -0.4
692,493 + -0.2
692,493 + +0.5
692,493 + -1.8
692,493 + -0.1
692,493 + -1.9
692,493 + +1.0
692,493 + +1.4
692,493 + +0.8
692,493 + +0.5
692,493 + -0.2
692,493 + -2.2
692,493 + +1.9
692,493 + +1.4
692,493 + -0.3
692,494 - +0.2
692,494 - +0.2
692,494 - -1.3
692,494 - -1.4
692,494 - -0.7
692,494 - +0.5
692,552 + -0.7
692,552 + -0.6
692,552 + +1.1
692,553 - +0.8
692,553 - -1.4
692,553 - -0.9
692,567 + -1.8
692,568 - +0.1
692,909 - -1.2
692,995 + Psest_0637 0.55 -1.0
692,996 - Psest_0637 0.55 -1.1
692,996 - Psest_0637 0.55 +0.1
692,996 - Psest_0637 0.55 +1.1
692,996 - Psest_0637 0.55 +0.4
693,022 + Psest_0637 0.58 +1.5
693,092 + Psest_0637 0.67 -1.0
693,092 + Psest_0637 0.67 +0.3
693,093 - Psest_0637 0.67 +0.3
693,119 - Psest_0637 0.70 -0.2
693,121 - Psest_0637 0.70 +0.5
693,232 + Psest_0637 0.83 +0.1
693,232 + Psest_0637 0.83 +2.9
693,232 + Psest_0637 0.83 -0.5
693,233 - Psest_0637 0.84 -0.9
693,233 - Psest_0637 0.84 +2.1
693,233 - Psest_0637 0.84 -1.9
693,233 - Psest_0637 0.84 -0.9
693,233 - Psest_0637 0.84 -0.5
693,233 - Psest_0637 0.84 -2.3
693,233 - Psest_0637 0.84 +1.3
693,391 + +1.5
693,418 + -0.2

Or see this region's nucleotide sequence