Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3983

Experiment: Aluminum chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3982 and Psest_3983 are separated by 31 nucleotidesPsest_3983 and Psest_3984 are separated by 366 nucleotides Psest_3982: Psest_3982 - hypothetical protein, at 4,149,337 to 4,150,647 _3982 Psest_3983: Psest_3983 - Aldo/keto reductases, related to diketogulonate reductase, at 4,150,679 to 4,151,596 _3983 Psest_3984: Psest_3984 - Methyl-accepting chemotaxis protein, at 4,151,963 to 4,153,984 _3984 Position (kb) 4150 4151 4152Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4149.888 kb on + strand, within Psest_3982at 4149.889 kb on - strand, within Psest_3982at 4149.936 kb on - strand, within Psest_3982at 4150.058 kb on + strand, within Psest_3982at 4150.058 kb on + strand, within Psest_3982at 4150.058 kb on + strand, within Psest_3982at 4150.059 kb on - strand, within Psest_3982at 4150.059 kb on - strand, within Psest_3982at 4150.059 kb on - strand, within Psest_3982at 4150.274 kb on + strand, within Psest_3982at 4150.274 kb on + strand, within Psest_3982at 4150.274 kb on + strand, within Psest_3982at 4150.274 kb on + strand, within Psest_3982at 4150.275 kb on - strand, within Psest_3982at 4150.275 kb on - strand, within Psest_3982at 4150.275 kb on - strand, within Psest_3982at 4150.292 kb on + strand, within Psest_3982at 4150.292 kb on + strand, within Psest_3982at 4150.293 kb on - strand, within Psest_3982at 4150.293 kb on - strand, within Psest_3982at 4150.293 kb on - strand, within Psest_3982at 4150.293 kb on - strand, within Psest_3982at 4150.293 kb on - strand, within Psest_3982at 4150.391 kb on + strand, within Psest_3982at 4150.391 kb on + strand, within Psest_3982at 4150.391 kb on + strand, within Psest_3982at 4150.391 kb on + strand, within Psest_3982at 4150.391 kb on + strand, within Psest_3982at 4150.391 kb on + strand, within Psest_3982at 4150.391 kb on + strand, within Psest_3982at 4150.391 kb on + strand, within Psest_3982at 4150.392 kb on - strand, within Psest_3982at 4150.392 kb on - strand, within Psest_3982at 4150.392 kb on - strand, within Psest_3982at 4150.392 kb on - strand, within Psest_3982at 4150.392 kb on - strand, within Psest_3982at 4150.761 kb on + strandat 4150.761 kb on + strandat 4150.761 kb on + strandat 4150.761 kb on + strandat 4150.762 kb on - strandat 4150.762 kb on - strandat 4151.001 kb on + strand, within Psest_3983at 4151.001 kb on + strand, within Psest_3983at 4151.001 kb on + strand, within Psest_3983at 4151.073 kb on + strand, within Psest_3983at 4151.073 kb on + strand, within Psest_3983at 4151.073 kb on + strand, within Psest_3983at 4151.073 kb on + strand, within Psest_3983at 4151.091 kb on + strand, within Psest_3983at 4151.091 kb on + strand, within Psest_3983at 4151.091 kb on + strand, within Psest_3983at 4151.091 kb on + strand, within Psest_3983at 4151.324 kb on - strand, within Psest_3983at 4151.328 kb on + strand, within Psest_3983at 4151.483 kb on - strand, within Psest_3983at 4151.592 kb on + strandat 4151.592 kb on + strandat 4151.592 kb on + strandat 4151.593 kb on - strandat 4151.610 kb on + strandat 4151.611 kb on - strandat 4151.652 kb on + strandat 4151.783 kb on + strandat 4151.783 kb on + strandat 4151.792 kb on + strandat 4151.905 kb on - strandat 4151.905 kb on - strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.080 kb on + strandat 4152.081 kb on - strandat 4152.081 kb on - strandat 4152.081 kb on - strandat 4152.083 kb on - strandat 4152.162 kb on + strandat 4152.163 kb on - strandat 4152.163 kb on - strandat 4152.213 kb on - strand, within Psest_3984at 4152.249 kb on + strand, within Psest_3984at 4152.249 kb on + strand, within Psest_3984at 4152.250 kb on - strand, within Psest_3984at 4152.250 kb on - strand, within Psest_3984at 4152.250 kb on - strand, within Psest_3984at 4152.482 kb on + strand, within Psest_3984at 4152.579 kb on - strand, within Psest_3984

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 0.3 mM
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4,149,888 + Psest_3982 0.42 -0.3
4,149,889 - Psest_3982 0.42 +1.3
4,149,936 - Psest_3982 0.46 -0.6
4,150,058 + Psest_3982 0.55 -0.7
4,150,058 + Psest_3982 0.55 +0.3
4,150,058 + Psest_3982 0.55 +0.2
4,150,059 - Psest_3982 0.55 -1.8
4,150,059 - Psest_3982 0.55 -1.2
4,150,059 - Psest_3982 0.55 +2.6
4,150,274 + Psest_3982 0.71 -0.4
4,150,274 + Psest_3982 0.71 +1.0
4,150,274 + Psest_3982 0.71 +0.0
4,150,274 + Psest_3982 0.71 +1.6
4,150,275 - Psest_3982 0.72 +0.3
4,150,275 - Psest_3982 0.72 -2.2
4,150,275 - Psest_3982 0.72 -0.4
4,150,292 + Psest_3982 0.73 -0.2
4,150,292 + Psest_3982 0.73 +0.3
4,150,293 - Psest_3982 0.73 -1.2
4,150,293 - Psest_3982 0.73 +0.3
4,150,293 - Psest_3982 0.73 -1.2
4,150,293 - Psest_3982 0.73 +1.8
4,150,293 - Psest_3982 0.73 +0.8
4,150,391 + Psest_3982 0.80 +1.1
4,150,391 + Psest_3982 0.80 -1.8
4,150,391 + Psest_3982 0.80 -1.3
4,150,391 + Psest_3982 0.80 +0.5
4,150,391 + Psest_3982 0.80 +1.1
4,150,391 + Psest_3982 0.80 -1.5
4,150,391 + Psest_3982 0.80 +0.9
4,150,391 + Psest_3982 0.80 -1.0
4,150,392 - Psest_3982 0.80 +0.6
4,150,392 - Psest_3982 0.80 +0.6
4,150,392 - Psest_3982 0.80 +1.6
4,150,392 - Psest_3982 0.80 +1.0
4,150,392 - Psest_3982 0.80 +0.6
4,150,761 + -0.7
4,150,761 + -1.0
4,150,761 + +0.7
4,150,761 + +1.4
4,150,762 - -0.6
4,150,762 - -2.0
4,151,001 + Psest_3983 0.35 -0.2
4,151,001 + Psest_3983 0.35 +0.4
4,151,001 + Psest_3983 0.35 -2.8
4,151,073 + Psest_3983 0.43 -1.1
4,151,073 + Psest_3983 0.43 -0.6
4,151,073 + Psest_3983 0.43 -0.2
4,151,073 + Psest_3983 0.43 +0.9
4,151,091 + Psest_3983 0.45 +0.4
4,151,091 + Psest_3983 0.45 -0.3
4,151,091 + Psest_3983 0.45 -1.3
4,151,091 + Psest_3983 0.45 -1.6
4,151,324 - Psest_3983 0.70 -1.3
4,151,328 + Psest_3983 0.71 -2.3
4,151,483 - Psest_3983 0.88 -1.2
4,151,592 + +0.0
4,151,592 + +1.1
4,151,592 + +1.2
4,151,593 - +1.3
4,151,610 + +0.7
4,151,611 - +1.5
4,151,652 + +0.5
4,151,783 + -0.1
4,151,783 + +2.7
4,151,792 + -1.1
4,151,905 - -0.5
4,151,905 - +1.7
4,152,080 + +0.1
4,152,080 + -1.6
4,152,080 + +0.1
4,152,080 + -1.6
4,152,080 + +0.8
4,152,080 + +0.6
4,152,080 + +1.2
4,152,080 + -0.8
4,152,080 + -0.5
4,152,080 + +0.0
4,152,080 + +0.3
4,152,080 + -0.5
4,152,080 + +0.0
4,152,080 + +0.5
4,152,081 - -0.2
4,152,081 - +1.2
4,152,081 - +0.0
4,152,083 - -0.4
4,152,162 + -0.6
4,152,163 - +1.1
4,152,163 - -0.2
4,152,213 - Psest_3984 0.12 -0.2
4,152,249 + Psest_3984 0.14 -0.6
4,152,249 + Psest_3984 0.14 -0.6
4,152,250 - Psest_3984 0.14 +0.6
4,152,250 - Psest_3984 0.14 -0.5
4,152,250 - Psest_3984 0.14 -1.2
4,152,482 + Psest_3984 0.26 -0.5
4,152,579 - Psest_3984 0.30 +0.1

Or see this region's nucleotide sequence