Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03211 and SMc03150 are separated by 89 nucleotides
SMc03211: SMc03211 - 4-hydroxyphenylpyruvate dioxygenase, at 3,175,543 to 3,176,655
SMc03211
SMc03150: SMc03150 - transcriptional regulator, at 3,176,745 to 3,177,458
SMc03150
Position (kb)
3176
3177
3178 Strain fitness (log2 ratio)
-2
-1
0
1 at 3175.880 kb on - strand, within SMc03211 at 3175.880 kb on - strand, within SMc03211 at 3175.942 kb on + strand, within SMc03211 at 3175.943 kb on - strand, within SMc03211 at 3176.038 kb on + strand, within SMc03211 at 3176.038 kb on + strand, within SMc03211 at 3176.038 kb on + strand, within SMc03211 at 3176.041 kb on + strand, within SMc03211 at 3176.069 kb on - strand, within SMc03211 at 3176.102 kb on - strand, within SMc03211 at 3176.181 kb on + strand, within SMc03211 at 3176.181 kb on + strand, within SMc03211 at 3176.251 kb on + strand, within SMc03211 at 3176.311 kb on + strand, within SMc03211 at 3176.311 kb on + strand, within SMc03211 at 3176.311 kb on + strand, within SMc03211 at 3176.312 kb on - strand, within SMc03211 at 3176.377 kb on + strand, within SMc03211 at 3176.673 kb on + strand at 3176.673 kb on - strand at 3176.674 kb on - strand at 3176.687 kb on + strand at 3176.687 kb on + strand at 3176.687 kb on + strand at 3176.706 kb on - strand at 3176.733 kb on - strand at 3176.810 kb on - strand at 3176.854 kb on + strand, within SMc03150 at 3176.854 kb on + strand, within SMc03150 at 3176.854 kb on + strand, within SMc03150 at 3176.855 kb on - strand, within SMc03150 at 3176.969 kb on + strand, within SMc03150 at 3176.969 kb on + strand, within SMc03150 at 3176.969 kb on + strand, within SMc03150 at 3177.126 kb on + strand, within SMc03150 at 3177.127 kb on - strand, within SMc03150 at 3177.340 kb on - strand, within SMc03150 at 3177.453 kb on + strand at 3177.453 kb on - strand at 3177.454 kb on - strand at 3177.483 kb on - strand at 3177.528 kb on + strand at 3177.528 kb on + strand at 3177.529 kb on - strand at 3177.529 kb on - strand at 3177.653 kb on + strand at 3177.668 kb on - strand at 3177.678 kb on + strand at 3177.697 kb on + strand at 3177.698 kb on - strand at 3177.720 kb on + strand at 3177.831 kb on + strand at 3177.831 kb on + strand at 3177.832 kb on - strand at 3177.832 kb on - strand at 3177.877 kb on + strand at 3177.878 kb on - strand at 3177.949 kb on + strand at 3177.949 kb on + strand at 3177.950 kb on - strand at 3178.116 kb on + strand at 3178.117 kb on - strand at 3178.117 kb on - strand at 3178.119 kb on - strand at 3178.187 kb on + strand at 3178.189 kb on + strand at 3178.236 kb on + strand at 3178.236 kb on + strand at 3178.236 kb on + strand at 3178.236 kb on + strand at 3178.236 kb on + strand at 3178.237 kb on - strand at 3178.237 kb on - strand at 3178.240 kb on + strand at 3178.240 kb on + strand at 3178.240 kb on + strand at 3178.240 kb on + strand at 3178.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 3,175,880 - SMc03211 0.30 +1.1 3,175,880 - SMc03211 0.30 -0.0 3,175,942 + SMc03211 0.36 +0.6 3,175,943 - SMc03211 0.36 +1.1 3,176,038 + SMc03211 0.44 -0.5 3,176,038 + SMc03211 0.44 -1.6 3,176,038 + SMc03211 0.44 -0.2 3,176,041 + SMc03211 0.45 +0.2 3,176,069 - SMc03211 0.47 +0.1 3,176,102 - SMc03211 0.50 +0.4 3,176,181 + SMc03211 0.57 +0.2 3,176,181 + SMc03211 0.57 -0.3 3,176,251 + SMc03211 0.64 +0.1 3,176,311 + SMc03211 0.69 +0.0 3,176,311 + SMc03211 0.69 -0.0 3,176,311 + SMc03211 0.69 +0.3 3,176,312 - SMc03211 0.69 -0.1 3,176,377 + SMc03211 0.75 +0.3 3,176,673 + +0.0 3,176,673 - -0.2 3,176,674 - -1.1 3,176,687 + -0.2 3,176,687 + +0.3 3,176,687 + +0.3 3,176,706 - -0.4 3,176,733 - -0.6 3,176,810 - -0.1 3,176,854 + SMc03150 0.15 +0.6 3,176,854 + SMc03150 0.15 +0.1 3,176,854 + SMc03150 0.15 +0.4 3,176,855 - SMc03150 0.15 -1.4 3,176,969 + SMc03150 0.31 -2.4 3,176,969 + SMc03150 0.31 +0.6 3,176,969 + SMc03150 0.31 +0.9 3,177,126 + SMc03150 0.53 +0.6 3,177,127 - SMc03150 0.54 -0.3 3,177,340 - SMc03150 0.83 +1.1 3,177,453 + +0.0 3,177,453 - -0.1 3,177,454 - -0.3 3,177,483 - -1.2 3,177,528 + -0.9 3,177,528 + -0.3 3,177,529 - +1.3 3,177,529 - -0.4 3,177,653 + +0.5 3,177,668 - +0.0 3,177,678 + -0.4 3,177,697 + +0.3 3,177,698 - -1.5 3,177,720 + +0.0 3,177,831 + +0.4 3,177,831 + +0.3 3,177,832 - -0.7 3,177,832 - +0.0 3,177,877 + +0.4 3,177,878 - +0.2 3,177,949 + -0.4 3,177,949 + +0.8 3,177,950 - -1.3 3,178,116 + +0.4 3,178,117 - -0.2 3,178,117 - -0.1 3,178,119 - +0.9 3,178,187 + +0.7 3,178,189 + +1.0 3,178,236 + -0.3 3,178,236 + -1.1 3,178,236 + +0.1 3,178,236 + -1.9 3,178,236 + -0.3 3,178,237 - +0.3 3,178,237 - +0.0 3,178,240 + -0.0 3,178,240 + -0.1 3,178,240 + -0.2 3,178,240 + +0.4 3,178,351 - -0.1
Or see this region's nucleotide sequence