Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04431 and SMc04432 overlap by 4 nucleotides SMc04432 and SMc02313 are separated by 202 nucleotides SMc02313 and SMc02314 are separated by 612 nucleotides
SMc04431: SMc04431 - hypothetical protein, at 684,058 to 684,321
SMc04431
SMc04432: SMc04432 - hypothetical protein, at 684,318 to 684,635
SMc04432
SMc02313: SMc02313 - hypothetical protein, at 684,838 to 685,194
SMc02313
SMc02314: SMc02314 - hypothetical protein, at 685,807 to 686,907
SMc02314
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2 at 683.870 kb on - strand at 683.998 kb on + strand at 683.998 kb on + strand at 683.998 kb on + strand at 683.999 kb on - strand at 684.009 kb on + strand at 684.010 kb on - strand at 684.015 kb on - strand at 684.053 kb on - strand at 684.128 kb on + strand, within SMc04431 at 684.128 kb on + strand, within SMc04431 at 684.128 kb on + strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.129 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.178 kb on - strand, within SMc04431 at 684.265 kb on - strand, within SMc04431 at 684.265 kb on - strand, within SMc04431 at 684.266 kb on + strand, within SMc04431 at 684.324 kb on - strand at 684.368 kb on + strand, within SMc04432 at 684.369 kb on - strand, within SMc04432 at 684.422 kb on + strand, within SMc04432 at 684.423 kb on - strand, within SMc04432 at 684.473 kb on + strand, within SMc04432 at 684.473 kb on + strand, within SMc04432 at 684.474 kb on - strand, within SMc04432 at 684.629 kb on + strand at 684.629 kb on + strand at 684.630 kb on - strand at 684.630 kb on - strand at 684.632 kb on - strand at 684.633 kb on + strand at 684.667 kb on - strand at 684.672 kb on - strand at 684.718 kb on + strand at 684.739 kb on + strand at 684.740 kb on - strand at 684.856 kb on - strand at 684.856 kb on - strand at 684.856 kb on - strand at 684.860 kb on - strand at 684.896 kb on - strand, within SMc02313 at 685.018 kb on - strand, within SMc02313 at 685.319 kb on + strand at 685.320 kb on - strand at 685.324 kb on - strand at 685.400 kb on + strand at 685.400 kb on + strand at 685.400 kb on + strand at 685.422 kb on - strand at 685.512 kb on - strand at 685.530 kb on - strand at 685.549 kb on + strand at 685.550 kb on - strand at 685.662 kb on + strand at 685.662 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.682 kb on + strand at 685.694 kb on + strand at 685.909 kb on - strand at 685.915 kb on + strand at 685.915 kb on + strand at 685.916 kb on - strand at 686.021 kb on - strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.129 kb on + strand, within SMc02314 at 686.130 kb on - strand, within SMc02314 at 686.134 kb on + strand, within SMc02314 at 686.143 kb on - strand, within SMc02314 at 686.172 kb on - strand, within SMc02314
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 683,870 - +0.7 683,998 + -0.2 683,998 + -0.5 683,998 + -0.3 683,999 - -0.1 684,009 + +0.1 684,010 - +0.0 684,015 - +0.2 684,053 - +0.4 684,128 + SMc04431 0.27 -0.8 684,128 + SMc04431 0.27 +0.1 684,128 + SMc04431 0.27 -0.2 684,129 - SMc04431 0.27 +0.4 684,129 - SMc04431 0.27 -0.6 684,129 - SMc04431 0.27 +0.6 684,129 - SMc04431 0.27 -0.3 684,129 - SMc04431 0.27 -0.2 684,129 - SMc04431 0.27 +0.1 684,178 - SMc04431 0.45 +0.4 684,178 - SMc04431 0.45 -0.3 684,178 - SMc04431 0.45 +0.4 684,265 - SMc04431 0.78 +0.2 684,265 - SMc04431 0.78 -0.1 684,266 + SMc04431 0.79 -2.3 684,324 - -0.5 684,368 + SMc04432 0.16 -0.1 684,369 - SMc04432 0.16 +0.2 684,422 + SMc04432 0.33 -0.2 684,423 - SMc04432 0.33 +0.4 684,473 + SMc04432 0.49 -0.1 684,473 + SMc04432 0.49 +1.7 684,474 - SMc04432 0.49 -0.0 684,629 + -0.1 684,629 + -0.2 684,630 - -0.3 684,630 - -0.2 684,632 - -0.2 684,633 + +1.1 684,667 - +0.3 684,672 - -0.8 684,718 + -1.1 684,739 + +0.2 684,740 - +0.1 684,856 - -0.1 684,856 - +0.1 684,856 - -0.1 684,860 - -0.9 684,896 - SMc02313 0.16 +1.6 685,018 - SMc02313 0.50 +0.2 685,319 + +0.2 685,320 - +2.4 685,324 - +0.6 685,400 + -0.2 685,400 + -0.3 685,400 + +0.0 685,422 - -0.2 685,512 - +0.0 685,530 - -0.6 685,549 + -0.0 685,550 - +0.3 685,662 + -0.3 685,662 + +0.5 685,682 + -0.0 685,682 + +0.0 685,682 + +0.1 685,682 + -0.2 685,682 + -0.8 685,694 + +0.6 685,909 - -0.1 685,915 + -0.5 685,915 + -0.9 685,916 - +1.0 686,021 - SMc02314 0.19 +1.7 686,029 + SMc02314 0.20 +0.3 686,029 + SMc02314 0.20 +0.3 686,029 + SMc02314 0.20 -1.6 686,029 + SMc02314 0.20 -0.4 686,029 + SMc02314 0.20 -0.3 686,030 - SMc02314 0.20 +1.0 686,030 - SMc02314 0.20 -0.9 686,030 - SMc02314 0.20 -0.3 686,030 - SMc02314 0.20 -0.9 686,030 - SMc02314 0.20 +1.0 686,030 - SMc02314 0.20 +0.2 686,030 - SMc02314 0.20 -1.1 686,129 + SMc02314 0.29 -0.0 686,130 - SMc02314 0.29 -1.9 686,134 + SMc02314 0.30 -0.5 686,143 - SMc02314 0.31 -0.5 686,172 - SMc02314 0.33 +0.2
Or see this region's nucleotide sequence