Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01797 and SMc01798 are separated by 3 nucleotides SMc01798 and SMc01799 are separated by 11 nucleotides SMc01799 and SMc01800 are separated by 199 nucleotides
SMc01797: SMc01797 - acetyltransferase, at 1,345,174 to 1,345,824
SMc01797
SMc01798: SMc01798 - hypothetical protein, at 1,345,828 to 1,346,568
SMc01798
SMc01799: SMc01799 - signal peptide protein, at 1,346,580 to 1,346,768
SMc01799
SMc01800: SMc01800 - cytochrome C oxidase assembly transmembrane protein, at 1,346,968 to 1,348,071
SMc01800
Position (kb)
1346
1347 Strain fitness (log2 ratio)
-1
0
1 at 1345.654 kb on + strand, within SMc01797 at 1345.655 kb on - strand, within SMc01797 at 1345.822 kb on + strand at 1345.970 kb on + strand, within SMc01798 at 1346.028 kb on - strand, within SMc01798 at 1346.133 kb on + strand, within SMc01798 at 1346.210 kb on + strand, within SMc01798 at 1346.210 kb on + strand, within SMc01798 at 1346.210 kb on + strand, within SMc01798 at 1346.210 kb on + strand, within SMc01798 at 1346.211 kb on - strand, within SMc01798 at 1346.372 kb on + strand, within SMc01798 at 1346.569 kb on - strand at 1346.662 kb on + strand, within SMc01799 at 1346.663 kb on - strand, within SMc01799 at 1346.731 kb on + strand, within SMc01799 at 1346.785 kb on - strand at 1347.227 kb on - strand, within SMc01800
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,345,654 + SMc01797 0.74 +0.1 1,345,655 - SMc01797 0.74 +0.3 1,345,822 + -1.6 1,345,970 + SMc01798 0.19 -0.2 1,346,028 - SMc01798 0.27 +0.1 1,346,133 + SMc01798 0.41 +0.3 1,346,210 + SMc01798 0.52 +0.8 1,346,210 + SMc01798 0.52 -0.1 1,346,210 + SMc01798 0.52 +0.4 1,346,210 + SMc01798 0.52 -0.4 1,346,211 - SMc01798 0.52 +0.5 1,346,372 + SMc01798 0.73 -0.1 1,346,569 - -0.2 1,346,662 + SMc01799 0.43 +0.1 1,346,663 - SMc01799 0.44 +0.8 1,346,731 + SMc01799 0.80 +0.4 1,346,785 - -0.2 1,347,227 - SMc01800 0.23 -0.5
Or see this region's nucleotide sequence