Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01721 and SMc01720 overlap by 4 nucleotides SMc01720 and SMc04434 are separated by 33 nucleotides SMc04434 and SMc01719 are separated by 307 nucleotides SMc01719 and SMc01718 are separated by 243 nucleotides
SMc01721: SMc01721 - inner membrane protein translocase component YidC, at 480,482 to 482,269
SMc01721
SMc01720: SMc01720 - ribonuclease P, at 482,266 to 482,652
SMc01720
SMc04434: SMc04434 - 50S ribosomal protein L34, at 482,686 to 482,820
SMc04434
SMc01719: SMc01719 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 483,128 to 485,125
SMc01719
SMc01718: SMc01718 - hypothetical protein, at 485,369 to 486,169
SMc01718
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -2
-1
0
1 at 482.812 kb on - strand at 482.812 kb on - strand at 482.993 kb on + strand at 482.993 kb on + strand at 483.048 kb on + strand at 483.049 kb on - strand at 483.148 kb on - strand at 483.148 kb on - strand at 483.197 kb on - strand at 483.197 kb on - strand at 483.221 kb on + strand at 483.221 kb on + strand at 483.326 kb on + strand at 483.327 kb on - strand at 483.327 kb on - strand at 483.327 kb on - strand at 483.327 kb on - strand at 483.659 kb on + strand at 483.659 kb on + strand, within SMc01719 at 483.660 kb on - strand, within SMc01719 at 483.734 kb on + strand, within SMc01719 at 483.735 kb on - strand, within SMc01719 at 483.735 kb on - strand, within SMc01719 at 483.735 kb on - strand, within SMc01719 at 483.736 kb on + strand, within SMc01719 at 483.737 kb on - strand, within SMc01719 at 484.022 kb on + strand, within SMc01719 at 484.201 kb on + strand, within SMc01719 at 484.201 kb on + strand, within SMc01719 at 484.270 kb on + strand, within SMc01719 at 484.362 kb on + strand, within SMc01719 at 484.362 kb on + strand, within SMc01719 at 484.968 kb on - strand at 484.996 kb on + strand at 484.996 kb on + strand at 484.996 kb on + strand at 484.996 kb on + strand at 485.380 kb on + strand at 485.513 kb on + strand, within SMc01718 at 485.513 kb on + strand, within SMc01718 at 485.514 kb on - strand, within SMc01718 at 485.534 kb on + strand, within SMc01718 at 485.535 kb on - strand, within SMc01718 at 485.535 kb on - strand at 485.535 kb on - strand, within SMc01718 at 485.535 kb on - strand, within SMc01718 at 485.535 kb on - strand, within SMc01718 at 485.535 kb on - strand, within SMc01718 at 485.630 kb on + strand, within SMc01718 at 485.631 kb on - strand, within SMc01718 at 485.631 kb on - strand, within SMc01718 at 485.631 kb on - strand, within SMc01718 at 485.631 kb on - strand, within SMc01718 at 485.858 kb on + strand, within SMc01718 at 485.859 kb on - strand, within SMc01718 at 485.859 kb on - strand, within SMc01718 at 485.859 kb on - strand, within SMc01718 at 485.972 kb on - strand, within SMc01718 at 485.990 kb on + strand, within SMc01718 at 485.990 kb on + strand, within SMc01718 at 485.990 kb on + strand, within SMc01718 at 485.992 kb on + strand, within SMc01718 at 485.992 kb on + strand, within SMc01718 at 485.992 kb on + strand, within SMc01718 at 485.993 kb on - strand, within SMc01718
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 482,812 - +0.6 482,812 - -0.9 482,993 + +1.7 482,993 + +0.9 483,048 + +0.7 483,049 - -0.2 483,148 - +1.7 483,148 - +1.0 483,197 - -0.3 483,197 - +1.2 483,221 + -0.1 483,221 + +0.0 483,326 + -0.7 483,327 - -0.5 483,327 - -2.3 483,327 - +0.5 483,327 - +0.7 483,659 + +1.2 483,659 + SMc01719 0.27 +1.7 483,660 - SMc01719 0.27 +0.4 483,734 + SMc01719 0.30 +0.5 483,735 - SMc01719 0.30 -1.8 483,735 - SMc01719 0.30 -0.6 483,735 - SMc01719 0.30 +0.1 483,736 + SMc01719 0.30 +0.4 483,737 - SMc01719 0.30 +0.3 484,022 + SMc01719 0.45 +0.4 484,201 + SMc01719 0.54 +0.5 484,201 + SMc01719 0.54 +0.4 484,270 + SMc01719 0.57 -0.2 484,362 + SMc01719 0.62 -0.5 484,362 + SMc01719 0.62 +0.4 484,968 - -1.2 484,996 + +0.6 484,996 + +0.4 484,996 + +0.4 484,996 + -0.7 485,380 + -0.1 485,513 + SMc01718 0.18 -0.4 485,513 + SMc01718 0.18 -0.6 485,514 - SMc01718 0.18 +0.0 485,534 + SMc01718 0.21 +0.2 485,535 - SMc01718 0.21 +0.0 485,535 - -0.6 485,535 - SMc01718 0.21 +0.7 485,535 - SMc01718 0.21 -0.3 485,535 - SMc01718 0.21 -0.0 485,535 - SMc01718 0.21 -0.4 485,630 + SMc01718 0.33 -0.9 485,631 - SMc01718 0.33 -0.5 485,631 - SMc01718 0.33 -0.3 485,631 - SMc01718 0.33 +1.0 485,631 - SMc01718 0.33 -0.0 485,858 + SMc01718 0.61 +0.3 485,859 - SMc01718 0.61 +0.4 485,859 - SMc01718 0.61 -0.7 485,859 - SMc01718 0.61 -1.3 485,972 - SMc01718 0.75 -1.6 485,990 + SMc01718 0.78 -0.4 485,990 + SMc01718 0.78 +0.3 485,990 + SMc01718 0.78 -0.5 485,992 + SMc01718 0.78 +0.3 485,992 + SMc01718 0.78 +0.3 485,992 + SMc01718 0.78 -0.2 485,993 - SMc01718 0.78 -0.3
Or see this region's nucleotide sequence