Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01552 and SMc01553 are separated by 61 nucleotides SMc01553 and SMc01554 are separated by 38 nucleotides
SMc01552: SMc01552 - hypothetical protein, at 2,492,677 to 2,493,828
SMc01552
SMc01553: SMc01553 - acyl carrier protein, at 2,493,890 to 2,494,138
SMc01553
SMc01554: SMc01554 - hypothetical protein, at 2,494,177 to 2,496,132
SMc01554
Position (kb)
2493
2494
2495 Strain fitness (log2 ratio)
-1
0
1
2 at 2492.894 kb on + strand, within SMc01552 at 2492.959 kb on + strand, within SMc01552 at 2492.959 kb on + strand, within SMc01552 at 2492.959 kb on + strand, within SMc01552 at 2492.959 kb on + strand, within SMc01552 at 2493.008 kb on - strand, within SMc01552 at 2493.008 kb on - strand, within SMc01552 at 2493.020 kb on - strand, within SMc01552 at 2493.115 kb on + strand, within SMc01552 at 2493.115 kb on + strand, within SMc01552 at 2493.115 kb on + strand, within SMc01552 at 2493.157 kb on + strand, within SMc01552 at 2493.163 kb on + strand, within SMc01552 at 2493.163 kb on + strand, within SMc01552 at 2493.163 kb on + strand, within SMc01552 at 2493.164 kb on - strand, within SMc01552 at 2493.251 kb on - strand, within SMc01552 at 2493.251 kb on - strand, within SMc01552 at 2493.251 kb on - strand, within SMc01552 at 2493.356 kb on - strand, within SMc01552 at 2493.477 kb on - strand, within SMc01552 at 2493.499 kb on + strand, within SMc01552 at 2493.752 kb on - strand at 2493.909 kb on - strand at 2493.909 kb on - strand at 2493.953 kb on + strand, within SMc01553 at 2494.105 kb on + strand, within SMc01553 at 2494.105 kb on + strand, within SMc01553 at 2494.891 kb on + strand, within SMc01554 at 2495.013 kb on + strand, within SMc01554
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,492,894 + SMc01552 0.19 +0.2 2,492,959 + SMc01552 0.24 +0.2 2,492,959 + SMc01552 0.24 -0.2 2,492,959 + SMc01552 0.24 -0.8 2,492,959 + SMc01552 0.24 -0.1 2,493,008 - SMc01552 0.29 -0.1 2,493,008 - SMc01552 0.29 +1.1 2,493,020 - SMc01552 0.30 -0.6 2,493,115 + SMc01552 0.38 -0.1 2,493,115 + SMc01552 0.38 +0.3 2,493,115 + SMc01552 0.38 -0.9 2,493,157 + SMc01552 0.42 -0.1 2,493,163 + SMc01552 0.42 -0.3 2,493,163 + SMc01552 0.42 +0.6 2,493,163 + SMc01552 0.42 -0.5 2,493,164 - SMc01552 0.42 +1.1 2,493,251 - SMc01552 0.50 -0.6 2,493,251 - SMc01552 0.50 -0.2 2,493,251 - SMc01552 0.50 -0.3 2,493,356 - SMc01552 0.59 +0.1 2,493,477 - SMc01552 0.69 +1.3 2,493,499 + SMc01552 0.71 -0.1 2,493,752 - +1.8 2,493,909 - -0.2 2,493,909 - +0.2 2,493,953 + SMc01553 0.25 +0.4 2,494,105 + SMc01553 0.86 +1.1 2,494,105 + SMc01553 0.86 +0.0 2,494,891 + SMc01554 0.37 -0.0 2,495,013 + SMc01554 0.43 -0.5
Or see this region's nucleotide sequence