Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02960

Experiment: RCH2_defined_1percent_glucose with Chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02955 and BWI76_RS02960 are separated by 198 nucleotidesBWI76_RS02960 and BWI76_RS02965 are separated by 52 nucleotides BWI76_RS02955: BWI76_RS02955 - PTS system, cellobiose-specific IIC component, at 604,097 to 605,453 _RS02955 BWI76_RS02960: BWI76_RS02960 - glucohydrolase, at 605,652 to 607,307 _RS02960 BWI76_RS02965: BWI76_RS02965 - PTS trehalose transporter subunit IIBC, at 607,360 to 608,778 _RS02965 Position (kb) 605 606 607 608Strain fitness (log2 ratio) -2 -1 0 1 2at 604.697 kb on - strand, within BWI76_RS02955at 604.762 kb on + strand, within BWI76_RS02955at 604.842 kb on + strand, within BWI76_RS02955at 604.842 kb on + strand, within BWI76_RS02955at 604.850 kb on - strand, within BWI76_RS02955at 604.886 kb on - strand, within BWI76_RS02955at 604.922 kb on - strand, within BWI76_RS02955at 604.975 kb on + strand, within BWI76_RS02955at 605.048 kb on - strand, within BWI76_RS02955at 605.309 kb on + strand, within BWI76_RS02955at 605.422 kb on + strandat 605.455 kb on + strandat 605.597 kb on + strandat 605.604 kb on + strandat 605.604 kb on + strandat 605.636 kb on - strandat 605.690 kb on + strandat 607.490 kb on + strandat 607.733 kb on + strand, within BWI76_RS02965at 607.813 kb on + strand, within BWI76_RS02965at 607.883 kb on - strandat 607.907 kb on + strand, within BWI76_RS02965at 607.912 kb on + strand, within BWI76_RS02965at 607.915 kb on - strand, within BWI76_RS02965at 608.178 kb on + strand, within BWI76_RS02965

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 600 mM
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604,697 - BWI76_RS02955 0.44 +0.6
604,762 + BWI76_RS02955 0.49 +1.1
604,842 + BWI76_RS02955 0.55 -0.2
604,842 + BWI76_RS02955 0.55 -0.1
604,850 - BWI76_RS02955 0.55 -0.1
604,886 - BWI76_RS02955 0.58 +1.0
604,922 - BWI76_RS02955 0.61 +0.1
604,975 + BWI76_RS02955 0.65 +0.0
605,048 - BWI76_RS02955 0.70 -0.5
605,309 + BWI76_RS02955 0.89 +1.7
605,422 + +0.1
605,455 + -0.0
605,597 + +0.8
605,604 + +0.0
605,604 + +0.1
605,636 - -0.5
605,690 + +2.3
607,490 + +2.1
607,733 + BWI76_RS02965 0.26 +1.6
607,813 + BWI76_RS02965 0.32 +1.4
607,883 - -1.8
607,907 + BWI76_RS02965 0.39 +1.5
607,912 + BWI76_RS02965 0.39 +1.6
607,915 - BWI76_RS02965 0.39 +1.3
608,178 + BWI76_RS02965 0.58 +1.5

Or see this region's nucleotide sequence