Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15910

Experiment: RCH2_defined_1percent_glucose with Chloride 600 mM and Betaine 100 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15900 and BWI76_RS15905 are separated by 136 nucleotidesBWI76_RS15905 and BWI76_RS15910 are separated by 60 nucleotidesBWI76_RS15910 and BWI76_RS15915 overlap by 7 nucleotidesBWI76_RS15915 and BWI76_RS15920 are separated by 102 nucleotides BWI76_RS15900: BWI76_RS15900 - hypothetical protein, at 3,299,628 to 3,299,953 _RS15900 BWI76_RS15905: BWI76_RS15905 - hypothetical protein, at 3,300,090 to 3,300,431 _RS15905 BWI76_RS15910: BWI76_RS15910 - spermidine acetyltransferase, at 3,300,492 to 3,301,052 _RS15910 BWI76_RS15915: BWI76_RS15915 - YnfC family lipoprotein, at 3,301,046 to 3,301,756 _RS15915 BWI76_RS15920: BWI76_RS15920 - hypothetical protein, at 3,301,859 to 3,302,110 _RS15920 Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3299.536 kb on - strandat 3299.569 kb on - strandat 3299.633 kb on - strandat 3299.744 kb on - strand, within BWI76_RS15900at 3299.781 kb on - strand, within BWI76_RS15900at 3300.394 kb on + strand, within BWI76_RS15905at 3300.402 kb on - strandat 3300.402 kb on - strandat 3300.545 kb on - strandat 3300.545 kb on - strandat 3300.847 kb on + strand, within BWI76_RS15910at 3301.015 kb on - strandat 3301.038 kb on + strandat 3301.082 kb on - strandat 3301.114 kb on - strandat 3301.123 kb on + strand, within BWI76_RS15915at 3301.234 kb on + strand, within BWI76_RS15915at 3301.677 kb on + strand, within BWI76_RS15915at 3301.689 kb on + strandat 3301.702 kb on + strandat 3301.779 kb on - strandat 3301.871 kb on + strandat 3301.887 kb on - strand, within BWI76_RS15920

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 600 mM and Betaine 100 uM
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3,299,536 - +0.6
3,299,569 - +1.1
3,299,633 - -0.2
3,299,744 - BWI76_RS15900 0.36 +0.0
3,299,781 - BWI76_RS15900 0.47 +0.1
3,300,394 + BWI76_RS15905 0.89 -0.1
3,300,402 - +0.2
3,300,402 - -0.5
3,300,545 - -0.4
3,300,545 - -0.1
3,300,847 + BWI76_RS15910 0.63 +1.5
3,301,015 - +0.7
3,301,038 + +0.9
3,301,082 - +1.3
3,301,114 - +0.9
3,301,123 + BWI76_RS15915 0.11 -0.6
3,301,234 + BWI76_RS15915 0.26 +0.4
3,301,677 + BWI76_RS15915 0.89 +0.3
3,301,689 + +2.8
3,301,702 + +1.2
3,301,779 - -0.3
3,301,871 + -2.4
3,301,887 - BWI76_RS15920 0.11 -0.4

Or see this region's nucleotide sequence