Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2570

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B
3,026,607	-		Pf6N2E2_2569	0.19	-0.1
3,026,631	+		Pf6N2E2_2569	0.21	+0.7
3,026,631	+		Pf6N2E2_2569	0.21	-0.5
3,026,631	+		Pf6N2E2_2569	0.21	-0.4
3,026,631	+		Pf6N2E2_2569	0.21	-1.3
3,026,631	+		Pf6N2E2_2569	0.21	-0.6
3,026,632	-		Pf6N2E2_2569	0.21	-0.4
3,026,632	-		Pf6N2E2_2569	0.21	-0.4
3,026,632	-		Pf6N2E2_2569	0.21	+0.8
3,026,632	-		Pf6N2E2_2569	0.21	-0.6
3,026,651	+		Pf6N2E2_2569	0.23	-0.5
3,026,651	+		Pf6N2E2_2569	0.23	-0.3
3,026,651	+		Pf6N2E2_2569	0.23	+0.2
3,026,651	+		Pf6N2E2_2569	0.23	-0.5
3,026,651	+		Pf6N2E2_2569	0.23	-1.1
3,026,652	-		Pf6N2E2_2569	0.23	+0.6
3,026,926	-		Pf6N2E2_2569	0.47	+0.5
3,026,945	+		Pf6N2E2_2569	0.49	+0.1
3,027,107	+		Pf6N2E2_2569	0.63	-1.7
3,027,107	+		Pf6N2E2_2569	0.63	+1.5
3,027,290	-		Pf6N2E2_2569	0.79	+0.4
3,027,315	+		Pf6N2E2_2569	0.82	-1.5
3,027,315	+		Pf6N2E2_2569	0.82	-0.1
3,027,316	-		Pf6N2E2_2569	0.82	-0.5
3,027,316	-		Pf6N2E2_2569	0.82	+0.2
3,027,316	-		Pf6N2E2_2569	0.82	+0.2
3,027,356	+		Pf6N2E2_2569	0.85	-0.4
3,027,356	+		Pf6N2E2_2569	0.85	-2.1
3,027,356	+		Pf6N2E2_2569	0.85	-0.5
3,027,356	+		Pf6N2E2_2569	0.85	-0.3
3,027,441	+				-0.2
3,027,442	-				-0.5
3,027,442	-				-0.4
3,027,442	-				-1.5
3,027,442	-				+0.3
3,027,513	+				+0.5
3,027,513	+				-1.0
3,027,513	+				+0.5
3,027,513	+				-0.6
3,027,513	+				-0.5
3,027,514	-				-0.2
3,027,514	-				-1.2
3,027,514	-				-1.1
3,027,517	+				-2.2
3,027,517	+				+1.5
3,027,518	-				+0.5
3,027,518	-				-0.5
3,027,518	-				-1.1
3,027,522	+				+0.2
3,027,523	-				-0.4
3,027,523	-				-0.2
3,027,523	-				+1.5
3,027,534	+				+1.5
3,027,576	+				-0.8
3,027,721	+				-0.1
3,027,721	+				-1.8
3,027,833	+		Pf6N2E2_2570	0.12	-1.0
3,027,833	+		Pf6N2E2_2570	0.12	-1.6
3,027,859	+		Pf6N2E2_2570	0.13	-2.6
3,027,860	-		Pf6N2E2_2570	0.13	-1.2
3,028,043	+		Pf6N2E2_2570	0.21	-0.9
3,028,043	+		Pf6N2E2_2570	0.21	-0.7
3,028,043	+		Pf6N2E2_2570	0.21	+1.2
3,028,044	-		Pf6N2E2_2570	0.21	-0.5
3,028,047	+		Pf6N2E2_2570	0.21	-1.5
3,028,048	-		Pf6N2E2_2570	0.21	-0.7
3,028,048	-		Pf6N2E2_2570	0.21	-1.2
3,028,048	-		Pf6N2E2_2570	0.21	-1.0
3,028,048	-		Pf6N2E2_2570	0.21	-1.2
3,028,166	+		Pf6N2E2_2570	0.26	-1.4
3,028,166	+		Pf6N2E2_2570	0.26	-3.1
3,029,004	+		Pf6N2E2_2570	0.63	-1.6
3,029,329	-		Pf6N2E2_2570	0.78	-3.2
3,029,677	+				+0.2
3,029,677	+				-1.6
3,029,677	+				-1.1
3,029,678	-				-0.3
3,029,678	-				-0.2
3,029,678	-				-0.8
3,029,767	+				-2.1
3,029,767	+				-0.3
3,029,767	+				-0.5
3,029,767	+				-1.6
3,029,768	-				-0.6
3,029,843	+				-1.5
3,029,843	+				+0.9
3,029,843	+				-1.5
3,029,844	-				-0.0
3,029,854	+				-1.9
3,029,855	-				+1.5
3,029,910	+				-0.3
3,029,910	+				+0.5
3,029,910	+				-0.1
3,029,910	+				-0.6
3,029,911	-				+0.4
3,029,911	-				+0.7
3,029,911	-				-0.5
3,029,911	-				+0.5
3,029,911	-				+0.8
3,029,926	-				+0.7
3,030,125	+		Pf6N2E2_2571	0.35	+0.5
3,030,125	+		Pf6N2E2_2571	0.35	-0.4
3,030,126	-		Pf6N2E2_2571	0.35	+0.5
3,030,126	-		Pf6N2E2_2571	0.35	-0.0
3,030,126	-		Pf6N2E2_2571	0.35	-0.3
3,030,377	+		Pf6N2E2_2571	0.67	-0.4
3,030,378	-		Pf6N2E2_2571	0.67	+0.3
3,030,378	-		Pf6N2E2_2571	0.67	-0.3
3,030,378	-		Pf6N2E2_2571	0.67	-0.2
3,030,378	-		Pf6N2E2_2571	0.67	+0.5
3,030,378	-		Pf6N2E2_2571	0.67	+0.2
3,030,378	-		Pf6N2E2_2571	0.67	-0.3
3,030,645	+				+0.7
3,030,645	+				-0.8
3,030,645	+				+0.6
3,030,645	+				-0.0
3,030,646	-				-0.9
3,030,646	-				+0.2
3,030,734	+		Pf6N2E2_2572	0.18	+1.5
3,030,735	-		Pf6N2E2_2572	0.18	-0.6
3,030,743	-		Pf6N2E2_2572	0.21	-1.5