Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06240

Experiment: Formate 100 mM hypophosphite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06235 and MMP_RS06240 are separated by 18 nucleotidesMMP_RS06240 and MMP_RS06245 are separated by 38 nucleotidesMMP_RS06245 and MMP_RS06250 are separated by 41 nucleotides MMP_RS06235: MMP_RS06235 - hydroxymethylglutaryl-CoA synthase, at 1,198,055 to 1,199,104 _RS06235 MMP_RS06240: MMP_RS06240 - thiolase domain-containing protein, at 1,199,123 to 1,200,301 _RS06240 MMP_RS06245: MMP_RS06245 - Zn-ribbon domain-containing OB-fold protein, at 1,200,340 to 1,200,732 _RS06245 MMP_RS06250: MMP_RS06250 - hypothetical protein, at 1,200,774 to 1,201,451 _RS06250 Position (kb) 1199 1200 1201Strain fitness (log2 ratio) -2 -1 0 1 2at 1198.458 kb on + strandat 1199.556 kb on + strandat 1199.556 kb on + strandat 1199.650 kb on - strandat 1199.888 kb on + strandat 1200.236 kb on + strandat 1200.312 kb on + strandat 1200.766 kb on + strandat 1200.776 kb on + strandat 1200.780 kb on + strandat 1200.826 kb on - strandat 1200.857 kb on + strand, within MMP_RS06250at 1200.917 kb on - strand, within MMP_RS06250at 1201.002 kb on - strand, within MMP_RS06250at 1201.150 kb on + strand, within MMP_RS06250at 1201.279 kb on + strand, within MMP_RS06250

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate 100 mM hypophosphite
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1,198,458 + -1.5
1,199,556 + -2.6
1,199,556 + -0.2
1,199,650 - -0.9
1,199,888 + -1.1
1,200,236 + -1.0
1,200,312 + +0.6
1,200,766 + -0.7
1,200,776 + +0.6
1,200,780 + -2.0
1,200,826 - -0.4
1,200,857 + MMP_RS06250 0.12 -0.2
1,200,917 - MMP_RS06250 0.21 -0.4
1,201,002 - MMP_RS06250 0.34 -1.1
1,201,150 + MMP_RS06250 0.55 +2.0
1,201,279 + MMP_RS06250 0.74 -0.1

Or see this region's nucleotide sequence