Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19665

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19660 and AO353_19665 are separated by 108 nucleotidesAO353_19665 and AO353_19670 are separated by 95 nucleotidesAO353_19670 and AO353_19675 are separated by 58 nucleotides AO353_19660: AO353_19660 - LysR family transcriptional regulator, at 4,311,864 to 4,312,769 _19660 AO353_19665: AO353_19665 - quercetin 2,3-dioxygenase, at 4,312,878 to 4,313,744 _19665 AO353_19670: AO353_19670 - nicotinamidase, at 4,313,840 to 4,314,523 _19670 AO353_19675: AO353_19675 - hypothetical protein, at 4,314,582 to 4,315,208 _19675 Position (kb) 4312 4313 4314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4312.250 kb on + strand, within AO353_19660at 4312.250 kb on + strand, within AO353_19660at 4312.250 kb on + strand, within AO353_19660at 4312.251 kb on - strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.252 kb on + strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.253 kb on - strand, within AO353_19660at 4312.417 kb on + strand, within AO353_19660at 4312.417 kb on + strand, within AO353_19660at 4312.418 kb on - strand, within AO353_19660at 4312.429 kb on + strand, within AO353_19660at 4312.429 kb on + strand, within AO353_19660at 4312.429 kb on + strand, within AO353_19660at 4312.429 kb on + strand, within AO353_19660at 4312.430 kb on - strand, within AO353_19660at 4312.430 kb on - strand, within AO353_19660at 4312.430 kb on - strand, within AO353_19660at 4312.430 kb on - strand, within AO353_19660at 4312.430 kb on - strand, within AO353_19660at 4312.430 kb on - strandat 4312.574 kb on - strand, within AO353_19660at 4312.576 kb on + strand, within AO353_19660at 4312.576 kb on + strand, within AO353_19660at 4312.576 kb on + strand, within AO353_19660at 4312.577 kb on - strand, within AO353_19660at 4312.577 kb on - strand, within AO353_19660at 4312.577 kb on - strand, within AO353_19660at 4312.577 kb on - strand, within AO353_19660at 4312.577 kb on - strand, within AO353_19660at 4312.632 kb on + strand, within AO353_19660at 4312.632 kb on + strand, within AO353_19660at 4312.639 kb on - strand, within AO353_19660at 4312.744 kb on + strandat 4312.744 kb on + strandat 4312.744 kb on + strandat 4312.744 kb on + strandat 4312.744 kb on + strandat 4312.745 kb on - strandat 4312.745 kb on - strandat 4312.745 kb on - strandat 4312.745 kb on - strandat 4312.747 kb on + strandat 4312.748 kb on - strandat 4312.748 kb on - strandat 4312.748 kb on - strandat 4312.785 kb on - strandat 4312.792 kb on + strandat 4312.899 kb on + strandat 4312.899 kb on + strandat 4312.899 kb on + strandat 4312.899 kb on + strandat 4312.899 kb on + strandat 4312.899 kb on + strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.900 kb on - strandat 4312.946 kb on + strandat 4312.946 kb on + strandat 4312.947 kb on - strandat 4312.947 kb on - strandat 4312.947 kb on - strandat 4312.947 kb on - strandat 4312.947 kb on - strandat 4312.969 kb on + strand, within AO353_19665at 4312.969 kb on + strand, within AO353_19665at 4312.970 kb on - strand, within AO353_19665at 4312.970 kb on - strand, within AO353_19665at 4312.970 kb on - strand, within AO353_19665at 4313.050 kb on + strand, within AO353_19665at 4313.051 kb on - strand, within AO353_19665at 4313.094 kb on + strand, within AO353_19665at 4313.094 kb on + strand, within AO353_19665at 4313.094 kb on + strand, within AO353_19665at 4313.094 kb on + strand, within AO353_19665at 4313.094 kb on + strand, within AO353_19665at 4313.095 kb on - strand, within AO353_19665at 4313.095 kb on - strand, within AO353_19665at 4313.095 kb on - strand, within AO353_19665at 4313.095 kb on - strand, within AO353_19665at 4313.095 kb on - strand, within AO353_19665at 4313.251 kb on + strand, within AO353_19665at 4313.251 kb on + strand, within AO353_19665at 4313.295 kb on + strand, within AO353_19665at 4313.773 kb on + strandat 4313.773 kb on + strandat 4313.773 kb on + strandat 4313.774 kb on - strandat 4313.774 kb on - strandat 4313.782 kb on + strandat 4313.782 kb on + strandat 4313.782 kb on + strandat 4313.782 kb on + strandat 4313.783 kb on - strandat 4313.783 kb on - strandat 4313.783 kb on - strandat 4313.783 kb on - strandat 4313.786 kb on + strandat 4313.786 kb on + strandat 4313.786 kb on + strandat 4313.786 kb on + strandat 4313.786 kb on + strandat 4313.787 kb on - strandat 4313.787 kb on - strandat 4313.787 kb on - strandat 4313.954 kb on - strand, within AO353_19670at 4314.254 kb on + strand, within AO353_19670at 4314.254 kb on + strand, within AO353_19670at 4314.255 kb on - strand, within AO353_19670at 4314.425 kb on + strand, within AO353_19670at 4314.425 kb on + strand, within AO353_19670at 4314.426 kb on - strand, within AO353_19670at 4314.426 kb on - strand, within AO353_19670at 4314.447 kb on - strand, within AO353_19670at 4314.447 kb on - strand, within AO353_19670at 4314.447 kb on - strand, within AO353_19670at 4314.467 kb on + strandat 4314.468 kb on - strandat 4314.561 kb on + strandat 4314.562 kb on - strandat 4314.576 kb on - strandat 4314.576 kb on - strandat 4314.587 kb on + strandat 4314.587 kb on + strandat 4314.587 kb on + strandat 4314.587 kb on + strandat 4314.588 kb on - strandat 4314.588 kb on - strandat 4314.588 kb on - strandat 4314.588 kb on - strandat 4314.594 kb on + strandat 4314.594 kb on + strandat 4314.594 kb on + strandat 4314.595 kb on - strandat 4314.595 kb on - strandat 4314.595 kb on - strandat 4314.595 kb on - strandat 4314.726 kb on + strand, within AO353_19675at 4314.726 kb on + strand, within AO353_19675at 4314.726 kb on + strand, within AO353_19675at 4314.727 kb on - strand, within AO353_19675at 4314.727 kb on - strand, within AO353_19675at 4314.727 kb on - strand, within AO353_19675at 4314.727 kb on - strand, within AO353_19675at 4314.727 kb on - strand, within AO353_19675at 4314.727 kb on - strand, within AO353_19675at 4314.727 kb on - strand, within AO353_19675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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4,312,250 + AO353_19660 0.43 -0.3
4,312,250 + AO353_19660 0.43 -0.7
4,312,250 + AO353_19660 0.43 +0.6
4,312,251 - AO353_19660 0.43 +0.2
4,312,252 + AO353_19660 0.43 -0.0
4,312,252 + AO353_19660 0.43 -1.3
4,312,252 + AO353_19660 0.43 -1.8
4,312,252 + AO353_19660 0.43 +2.0
4,312,252 + AO353_19660 0.43 +0.7
4,312,252 + AO353_19660 0.43 +1.1
4,312,252 + AO353_19660 0.43 -0.2
4,312,252 + AO353_19660 0.43 -1.4
4,312,252 + AO353_19660 0.43 -2.2
4,312,252 + AO353_19660 0.43 -1.4
4,312,252 + AO353_19660 0.43 -1.2
4,312,252 + AO353_19660 0.43 +1.2
4,312,252 + AO353_19660 0.43 +0.7
4,312,253 - AO353_19660 0.43 -0.7
4,312,253 - AO353_19660 0.43 -1.7
4,312,253 - AO353_19660 0.43 -1.6
4,312,253 - AO353_19660 0.43 +1.7
4,312,253 - AO353_19660 0.43 -1.3
4,312,253 - AO353_19660 0.43 -2.7
4,312,253 - AO353_19660 0.43 +0.4
4,312,253 - AO353_19660 0.43 +0.4
4,312,253 - AO353_19660 0.43 +3.2
4,312,253 - AO353_19660 0.43 +2.1
4,312,253 - AO353_19660 0.43 +2.1
4,312,417 + AO353_19660 0.61 -3.2
4,312,417 + AO353_19660 0.61 -0.2
4,312,418 - AO353_19660 0.61 +1.7
4,312,429 + AO353_19660 0.62 -0.3
4,312,429 + AO353_19660 0.62 -1.1
4,312,429 + AO353_19660 0.62 +0.0
4,312,429 + AO353_19660 0.62 +0.7
4,312,430 - AO353_19660 0.62 +1.2
4,312,430 - AO353_19660 0.62 -0.3
4,312,430 - AO353_19660 0.62 +0.3
4,312,430 - AO353_19660 0.62 +0.2
4,312,430 - AO353_19660 0.62 +0.5
4,312,430 - -1.3
4,312,574 - AO353_19660 0.78 -1.0
4,312,576 + AO353_19660 0.79 -2.4
4,312,576 + AO353_19660 0.79 -2.5
4,312,576 + AO353_19660 0.79 -0.3
4,312,577 - AO353_19660 0.79 -0.3
4,312,577 - AO353_19660 0.79 +1.0
4,312,577 - AO353_19660 0.79 -1.2
4,312,577 - AO353_19660 0.79 -1.3
4,312,577 - AO353_19660 0.79 -0.6
4,312,632 + AO353_19660 0.85 +0.2
4,312,632 + AO353_19660 0.85 -0.3
4,312,639 - AO353_19660 0.86 -3.0
4,312,744 + +1.7
4,312,744 + -2.2
4,312,744 + +0.5
4,312,744 + +0.2
4,312,744 + -0.6
4,312,745 - +0.3
4,312,745 - +2.1
4,312,745 - +0.2
4,312,745 - -1.1
4,312,747 + -0.8
4,312,748 - +0.2
4,312,748 - -0.3
4,312,748 - +0.1
4,312,785 - +0.9
4,312,792 + +1.0
4,312,899 + +0.3
4,312,899 + -1.6
4,312,899 + -2.1
4,312,899 + +0.7
4,312,899 + -0.8
4,312,899 + +0.5
4,312,900 - +0.9
4,312,900 - -0.1
4,312,900 - -0.3
4,312,900 - +0.4
4,312,900 - +0.4
4,312,900 - -1.1
4,312,900 - +0.1
4,312,900 - +0.2
4,312,900 - -0.6
4,312,900 - -2.1
4,312,946 + +0.3
4,312,946 + -1.4
4,312,947 - -1.1
4,312,947 - +0.2
4,312,947 - +1.2
4,312,947 - -1.4
4,312,947 - +2.0
4,312,969 + AO353_19665 0.10 +0.7
4,312,969 + AO353_19665 0.10 -1.7
4,312,970 - AO353_19665 0.11 -0.1
4,312,970 - AO353_19665 0.11 -0.4
4,312,970 - AO353_19665 0.11 +0.7
4,313,050 + AO353_19665 0.20 -0.3
4,313,051 - AO353_19665 0.20 +2.0
4,313,094 + AO353_19665 0.25 +0.3
4,313,094 + AO353_19665 0.25 -2.0
4,313,094 + AO353_19665 0.25 +1.3
4,313,094 + AO353_19665 0.25 +3.0
4,313,094 + AO353_19665 0.25 -1.6
4,313,095 - AO353_19665 0.25 +0.8
4,313,095 - AO353_19665 0.25 -2.1
4,313,095 - AO353_19665 0.25 -1.1
4,313,095 - AO353_19665 0.25 +2.0
4,313,095 - AO353_19665 0.25 +0.7
4,313,251 + AO353_19665 0.43 +0.9
4,313,251 + AO353_19665 0.43 +1.0
4,313,295 + AO353_19665 0.48 -0.4
4,313,773 + +0.6
4,313,773 + -1.8
4,313,773 + -0.6
4,313,774 - +1.2
4,313,774 - +0.4
4,313,782 + +1.1
4,313,782 + +1.3
4,313,782 + -2.3
4,313,782 + -2.3
4,313,783 - +0.9
4,313,783 - +0.4
4,313,783 - -0.8
4,313,783 - +0.2
4,313,786 + -0.8
4,313,786 + -2.4
4,313,786 + +1.2
4,313,786 + +1.3
4,313,786 + -2.0
4,313,787 - +0.5
4,313,787 - +0.2
4,313,787 - -0.6
4,313,954 - AO353_19670 0.17 -2.4
4,314,254 + AO353_19670 0.61 +0.1
4,314,254 + AO353_19670 0.61 +0.0
4,314,255 - AO353_19670 0.61 -0.7
4,314,425 + AO353_19670 0.86 +3.0
4,314,425 + AO353_19670 0.86 -1.6
4,314,426 - AO353_19670 0.86 -1.4
4,314,426 - AO353_19670 0.86 +0.3
4,314,447 - AO353_19670 0.89 +1.9
4,314,447 - AO353_19670 0.89 -1.0
4,314,447 - AO353_19670 0.89 +2.1
4,314,467 + +0.2
4,314,468 - +1.0
4,314,561 + +0.7
4,314,562 - +1.3
4,314,576 - +0.7
4,314,576 - -1.6
4,314,587 + -0.1
4,314,587 + -0.1
4,314,587 + -0.8
4,314,587 + +0.2
4,314,588 - -0.6
4,314,588 - -0.7
4,314,588 - -2.2
4,314,588 - -0.3
4,314,594 + +0.5
4,314,594 + -1.1
4,314,594 + +0.3
4,314,595 - +0.9
4,314,595 - +0.2
4,314,595 - -1.8
4,314,595 - +0.8
4,314,726 + AO353_19675 0.23 -0.3
4,314,726 + AO353_19675 0.23 -0.1
4,314,726 + AO353_19675 0.23 -1.4
4,314,727 - AO353_19675 0.23 +0.4
4,314,727 - AO353_19675 0.23 -0.4
4,314,727 - AO353_19675 0.23 +0.7
4,314,727 - AO353_19675 0.23 -1.3
4,314,727 - AO353_19675 0.23 +0.0
4,314,727 - AO353_19675 0.23 +1.4
4,314,727 - AO353_19675 0.23 +0.9

Or see this region's nucleotide sequence