Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28020

Experiment: Glucose (C) and Ammonium chloride (N); with TAPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS28015 and PFLU_RS28020 are separated by 82 nucleotidesPFLU_RS28020 and PFLU_RS28025 are separated by 198 nucleotides PFLU_RS28015: PFLU_RS28015 - DHA2 family efflux MFS transporter permease subunit, at 6,238,627 to 6,240,054 _RS28015 PFLU_RS28020: PFLU_RS28020 - ATP-dependent RNA helicase DbpA, at 6,240,137 to 6,241,522 _RS28020 PFLU_RS28025: PFLU_RS28025 - NAD(P)/FAD-dependent oxidoreductase, at 6,241,721 to 6,242,899 _RS28025 Position (kb) 6240 6241 6242Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6239.173 kb on + strand, within PFLU_RS28015at 6239.173 kb on + strand, within PFLU_RS28015at 6239.173 kb on + strand, within PFLU_RS28015at 6239.173 kb on + strand, within PFLU_RS28015at 6239.173 kb on + strand, within PFLU_RS28015at 6239.174 kb on - strand, within PFLU_RS28015at 6239.174 kb on - strand, within PFLU_RS28015at 6239.174 kb on - strand, within PFLU_RS28015at 6239.174 kb on - strand, within PFLU_RS28015at 6239.202 kb on - strand, within PFLU_RS28015at 6239.362 kb on + strand, within PFLU_RS28015at 6239.957 kb on + strandat 6239.957 kb on + strandat 6239.957 kb on + strandat 6239.957 kb on + strandat 6239.957 kb on + strandat 6240.069 kb on - strandat 6240.100 kb on + strandat 6240.100 kb on + strandat 6240.100 kb on + strandat 6240.100 kb on + strandat 6240.100 kb on + strandat 6240.100 kb on + strandat 6240.101 kb on - strandat 6240.142 kb on + strandat 6240.143 kb on - strandat 6240.143 kb on - strandat 6240.143 kb on - strandat 6240.143 kb on - strandat 6240.143 kb on - strandat 6240.161 kb on - strandat 6240.163 kb on + strandat 6240.163 kb on + strandat 6240.212 kb on + strandat 6240.212 kb on + strandat 6240.212 kb on + strandat 6240.213 kb on - strandat 6240.213 kb on - strandat 6240.213 kb on - strandat 6240.213 kb on - strandat 6240.350 kb on + strand, within PFLU_RS28020at 6240.350 kb on + strand, within PFLU_RS28020at 6240.351 kb on - strand, within PFLU_RS28020at 6240.351 kb on - strand, within PFLU_RS28020at 6240.586 kb on + strand, within PFLU_RS28020at 6240.635 kb on + strand, within PFLU_RS28020at 6240.635 kb on + strand, within PFLU_RS28020at 6240.636 kb on - strand, within PFLU_RS28020at 6240.636 kb on - strand, within PFLU_RS28020at 6240.705 kb on - strand, within PFLU_RS28020at 6240.940 kb on + strand, within PFLU_RS28020at 6240.940 kb on + strand, within PFLU_RS28020at 6240.940 kb on + strand, within PFLU_RS28020at 6240.941 kb on - strand, within PFLU_RS28020at 6240.941 kb on - strand, within PFLU_RS28020at 6240.941 kb on - strand, within PFLU_RS28020at 6240.993 kb on + strand, within PFLU_RS28020at 6240.993 kb on + strand, within PFLU_RS28020at 6240.994 kb on - strand, within PFLU_RS28020at 6240.994 kb on - strand, within PFLU_RS28020at 6241.324 kb on + strand, within PFLU_RS28020at 6241.325 kb on - strand, within PFLU_RS28020at 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.695 kb on + strandat 6241.695 kb on + strandat 6241.696 kb on - strandat 6241.706 kb on + strandat 6241.707 kb on - strandat 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.930 kb on + strand, within PFLU_RS28025at 6241.949 kb on + strand, within PFLU_RS28025at 6241.949 kb on + strand, within PFLU_RS28025at 6241.997 kb on + strand, within PFLU_RS28025at 6242.407 kb on + strand, within PFLU_RS28025at 6242.453 kb on + strand, within PFLU_RS28025

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C) and Ammonium chloride (N); with TAPS
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6,239,173 + PFLU_RS28015 0.38 +1.8
6,239,173 + PFLU_RS28015 0.38 -1.2
6,239,173 + PFLU_RS28015 0.38 -0.4
6,239,173 + PFLU_RS28015 0.38 -0.8
6,239,173 + PFLU_RS28015 0.38 +1.1
6,239,174 - PFLU_RS28015 0.38 +0.9
6,239,174 - PFLU_RS28015 0.38 +0.4
6,239,174 - PFLU_RS28015 0.38 -1.5
6,239,174 - PFLU_RS28015 0.38 +2.0
6,239,202 - PFLU_RS28015 0.40 +0.2
6,239,362 + PFLU_RS28015 0.51 -1.6
6,239,957 + +3.3
6,239,957 + +1.0
6,239,957 + +1.0
6,239,957 + -1.7
6,239,957 + +0.4
6,240,069 - -0.8
6,240,100 + +1.1
6,240,100 + +0.6
6,240,100 + +0.5
6,240,100 + +0.9
6,240,100 + -1.6
6,240,100 + +0.5
6,240,101 - -0.8
6,240,142 + +0.4
6,240,143 - -1.8
6,240,143 - -1.6
6,240,143 - +0.1
6,240,143 - -0.7
6,240,143 - +0.4
6,240,161 - +0.7
6,240,163 + -0.5
6,240,163 + +0.3
6,240,212 + -0.2
6,240,212 + -0.8
6,240,212 + -1.2
6,240,213 - -1.9
6,240,213 - +0.6
6,240,213 - -1.9
6,240,213 - -1.1
6,240,350 + PFLU_RS28020 0.15 +1.2
6,240,350 + PFLU_RS28020 0.15 -1.9
6,240,351 - PFLU_RS28020 0.15 -1.3
6,240,351 - PFLU_RS28020 0.15 +0.4
6,240,586 + PFLU_RS28020 0.32 -1.1
6,240,635 + PFLU_RS28020 0.36 -0.8
6,240,635 + PFLU_RS28020 0.36 -2.1
6,240,636 - PFLU_RS28020 0.36 +0.2
6,240,636 - PFLU_RS28020 0.36 -0.8
6,240,705 - PFLU_RS28020 0.41 -0.9
6,240,940 + PFLU_RS28020 0.58 -0.0
6,240,940 + PFLU_RS28020 0.58 +0.2
6,240,940 + PFLU_RS28020 0.58 -1.2
6,240,941 - PFLU_RS28020 0.58 +0.3
6,240,941 - PFLU_RS28020 0.58 -0.6
6,240,941 - PFLU_RS28020 0.58 -1.0
6,240,993 + PFLU_RS28020 0.62 -1.9
6,240,993 + PFLU_RS28020 0.62 +1.4
6,240,994 - PFLU_RS28020 0.62 -0.0
6,240,994 - PFLU_RS28020 0.62 -0.4
6,241,324 + PFLU_RS28020 0.86 +0.1
6,241,325 - PFLU_RS28020 0.86 -2.3
6,241,660 + -0.0
6,241,660 + +0.6
6,241,660 + -2.2
6,241,660 + -1.2
6,241,660 + +1.2
6,241,660 + -0.6
6,241,660 + +0.9
6,241,660 + +0.6
6,241,660 + +0.7
6,241,695 + +0.3
6,241,695 + -0.2
6,241,696 - -1.6
6,241,706 + -0.8
6,241,707 - -0.0
6,241,882 + PFLU_RS28025 0.14 -0.4
6,241,882 + PFLU_RS28025 0.14 +0.5
6,241,882 + PFLU_RS28025 0.14 -0.2
6,241,882 + PFLU_RS28025 0.14 +0.2
6,241,882 + PFLU_RS28025 0.14 +0.3
6,241,882 + PFLU_RS28025 0.14 +0.2
6,241,882 + PFLU_RS28025 0.14 +0.0
6,241,882 + PFLU_RS28025 0.14 -2.6
6,241,882 + PFLU_RS28025 0.14 +2.0
6,241,882 + PFLU_RS28025 0.14 -1.0
6,241,882 + PFLU_RS28025 0.14 +0.7
6,241,882 + PFLU_RS28025 0.14 +0.3
6,241,882 + PFLU_RS28025 0.14 +1.2
6,241,882 + PFLU_RS28025 0.14 -0.6
6,241,882 + PFLU_RS28025 0.14 -0.0
6,241,882 + PFLU_RS28025 0.14 +1.2
6,241,882 + PFLU_RS28025 0.14 +1.3
6,241,883 - PFLU_RS28025 0.14 -0.9
6,241,883 - PFLU_RS28025 0.14 -0.6
6,241,883 - PFLU_RS28025 0.14 -1.6
6,241,883 - PFLU_RS28025 0.14 +0.4
6,241,883 - PFLU_RS28025 0.14 +0.4
6,241,883 - PFLU_RS28025 0.14 -1.3
6,241,883 - PFLU_RS28025 0.14 -0.9
6,241,883 - PFLU_RS28025 0.14 -1.3
6,241,883 - PFLU_RS28025 0.14 +0.9
6,241,883 - PFLU_RS28025 0.14 -1.2
6,241,883 - PFLU_RS28025 0.14 -0.7
6,241,883 - PFLU_RS28025 0.14 +0.5
6,241,883 - PFLU_RS28025 0.14 +1.2
6,241,883 - PFLU_RS28025 0.14 -0.0
6,241,883 - PFLU_RS28025 0.14 +0.8
6,241,883 - PFLU_RS28025 0.14 +0.4
6,241,883 - PFLU_RS28025 0.14 -1.6
6,241,883 - PFLU_RS28025 0.14 +1.2
6,241,883 - PFLU_RS28025 0.14 -1.0
6,241,883 - PFLU_RS28025 0.14 +0.1
6,241,883 - PFLU_RS28025 0.14 -0.2
6,241,883 - PFLU_RS28025 0.14 +0.8
6,241,883 - PFLU_RS28025 0.14 +1.6
6,241,883 - PFLU_RS28025 0.14 -2.6
6,241,886 + PFLU_RS28025 0.14 -0.6
6,241,886 + PFLU_RS28025 0.14 -0.3
6,241,886 + PFLU_RS28025 0.14 +0.5
6,241,886 + PFLU_RS28025 0.14 +0.1
6,241,886 + PFLU_RS28025 0.14 +1.0
6,241,886 + PFLU_RS28025 0.14 -0.6
6,241,886 + PFLU_RS28025 0.14 -1.2
6,241,887 - PFLU_RS28025 0.14 +1.0
6,241,887 - PFLU_RS28025 0.14 +0.9
6,241,887 - PFLU_RS28025 0.14 -1.1
6,241,887 - PFLU_RS28025 0.14 +1.0
6,241,887 - PFLU_RS28025 0.14 +1.1
6,241,887 - PFLU_RS28025 0.14 +1.2
6,241,887 - PFLU_RS28025 0.14 -0.8
6,241,887 - PFLU_RS28025 0.14 -1.9
6,241,887 - PFLU_RS28025 0.14 +0.5
6,241,887 - PFLU_RS28025 0.14 +0.1
6,241,887 - PFLU_RS28025 0.14 -0.5
6,241,887 - PFLU_RS28025 0.14 -0.5
6,241,930 + PFLU_RS28025 0.18 +0.2
6,241,949 + PFLU_RS28025 0.19 -0.5
6,241,949 + PFLU_RS28025 0.19 -0.3
6,241,997 + PFLU_RS28025 0.23 -1.1
6,242,407 + PFLU_RS28025 0.58 -1.4
6,242,453 + PFLU_RS28025 0.62 -0.2

Or see this region's nucleotide sequence