Strain Fitness in Shewanella oneidensis MR-1 around SO4687

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,885,121	+				-1.2
4,885,153	+		SO4686	0.11	+1.0
4,885,163	+		SO4686	0.12	-0.4
4,885,163	+		SO4686	0.12	-0.5
4,885,255	+		SO4686	0.21	-2.1
4,885,258	-		SO4686	0.22	-3.1
4,885,291	+		SO4686	0.25	-0.8
4,885,331	-		SO4686	0.29	-1.4
4,885,331	-		SO4686	0.29	-0.6
4,885,351	-		SO4686	0.31	-2.5
4,885,403	-		SO4686	0.36	-2.2
4,885,479	-		SO4686	0.44	-0.0
4,885,493	+		SO4686	0.45	-1.9
4,885,501	-		SO4686	0.46	-2.9
4,885,501	-		SO4686	0.46	+1.2
4,885,505	+		SO4686	0.46	-1.2
4,885,589	+		SO4686	0.55	-3.4
4,885,613	+		SO4686	0.57	-0.5
4,885,710	-		SO4686	0.67	-0.8
4,885,888	+		SO4686	0.84	-1.9
4,885,896	-		SO4686	0.85	-1.5
4,885,919	+		SO4686	0.87	-2.0
4,885,968	+				-1.9
4,885,976	-				-1.5
4,886,003	-				-3.4
4,886,052	+				+0.4
4,886,061	-				+0.2
4,886,236	-	ugd	SO4687	0.14	-1.9
4,886,258	+	ugd	SO4687	0.16	-0.8
4,886,266	-	ugd	SO4687	0.17	+2.5
4,886,278	+	ugd	SO4687	0.18	-2.3
4,886,286	+	ugd	SO4687	0.18	-1.5
4,886,286	-	ugd	SO4687	0.18	-0.3
4,886,286	-	ugd	SO4687	0.18	-2.5
4,886,294	-	ugd	SO4687	0.19	-1.6
4,886,295	+	ugd	SO4687	0.19	-2.7
4,886,305	+	ugd	SO4687	0.20	-3.3
4,886,310	+	ugd	SO4687	0.21	-1.8
4,886,345	+	ugd	SO4687	0.24	-1.3
4,886,345	+	ugd	SO4687	0.24	-0.6
4,886,345	+	ugd	SO4687	0.24	+0.5
4,886,345	+	ugd	SO4687	0.24	-0.7
4,886,353	-	ugd	SO4687	0.24	+1.0
4,886,422	-	ugd	SO4687	0.30	-1.4
4,886,438	+	ugd	SO4687	0.32	-2.3
4,886,438	+	ugd	SO4687	0.32	-3.6
4,886,444	-	ugd	SO4687	0.32	-0.6
4,886,446	-	ugd	SO4687	0.32	-2.8
4,886,446	-	ugd	SO4687	0.32	+1.5
4,886,583	+	ugd	SO4687	0.44	-1.6
4,886,583	+	ugd	SO4687	0.44	-2.2
4,886,583	+	ugd	SO4687	0.44	-1.6
4,886,585	+	ugd	SO4687	0.44	-0.6
4,886,591	-	ugd	SO4687	0.45	-0.0
4,886,599	-	ugd	SO4687	0.45	-0.2
4,886,601	-	ugd	SO4687	0.46	-1.2
4,886,609	-	ugd	SO4687	0.46	-0.9
4,886,739	-	ugd	SO4687	0.57	-2.4
4,886,774	+	ugd	SO4687	0.60	-1.9
4,886,774	+	ugd	SO4687	0.60	-0.8
4,886,774	+	ugd	SO4687	0.60	-1.5
4,886,783	-	ugd	SO4687	0.61	-3.0
4,886,793	+	ugd	SO4687	0.62	-2.4
4,886,867	+	ugd	SO4687	0.68	+0.1
4,887,054	+	ugd	SO4687	0.84	-1.7
4,887,054	+	ugd	SO4687	0.84	-2.5
4,887,203	+				-1.4
4,887,217	+				-1.8
4,887,246	+				-2.6
4,887,261	+				-0.6
4,887,469	-				+1.0
4,887,541	+				+1.9
4,887,541	+				+1.7
4,887,544	-		SO4688	0.10	+0.6
4,887,544	-		SO4688	0.10	-1.9
4,887,549	-		SO4688	0.11	-0.0
4,887,551	+		SO4688	0.11	-0.4
4,887,551	+		SO4688	0.11	+0.2
4,887,559	-		SO4688	0.12	+0.5
4,887,602	-		SO4688	0.18	-1.2
4,887,623	+		SO4688	0.21	-0.6
4,887,664	-		SO4688	0.27	-0.8
4,887,666	+		SO4688	0.27	+1.6
4,887,671	+		SO4688	0.28	-0.0
4,887,671	+		SO4688	0.28	+0.9
4,887,671	+		SO4688	0.28	+0.7
4,887,671	+		SO4688	0.28	+0.4
4,887,674	-		SO4688	0.28	+1.5
4,887,674	-		SO4688	0.28	+1.5
4,887,676	+		SO4688	0.28	+0.3
4,887,676	+		SO4688	0.28	+0.2
4,887,676	+		SO4688	0.28	+0.5
4,887,676	+		SO4688	0.28	-1.4
4,887,679	-		SO4688	0.29	-1.6
4,887,679	-		SO4688	0.29	-1.5
4,887,679	-		SO4688	0.29	-2.4
4,887,679	-		SO4688	0.29	+0.6
4,887,684	-		SO4688	0.29	+0.4
4,887,684	-		SO4688	0.29	+0.6
4,887,684	-		SO4688	0.29	-1.3
4,887,684	-		SO4688	0.29	-0.4
4,887,701	-		SO4688	0.32	-0.5
4,887,701	-		SO4688	0.32	-0.5
4,887,748	+		SO4688	0.38	+1.3
4,887,801	-		SO4688	0.45	-0.2
4,887,903	+		SO4688	0.59	+0.7
4,887,909	-		SO4688	0.60	+0.1
4,887,935	+		SO4688	0.64	+0.4
4,887,935	+		SO4688	0.64	-0.9
4,887,952	+		SO4688	0.66	-0.3
4,887,961	+		SO4688	0.67	-0.7
4,888,075	-		SO4688	0.83	+1.6
4,888,138	-				-1.5
4,888,139	+				+1.7
4,888,196	+				+0.7
4,888,213	+				+1.3