Strain Fitness in Shewanella oneidensis MR-1 around SO4686

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,884,128	+		SO4685	0.61	+3.1
4,884,136	-		SO4685	0.61	+2.4
4,884,274	+		SO4685	0.70	-2.2
4,884,312	-		SO4685	0.73	+0.8
4,884,324	+		SO4685	0.74	-0.0
4,884,324	+		SO4685	0.74	+3.5
4,884,404	+		SO4685	0.79	+2.9
4,884,404	+		SO4685	0.79	+2.2
4,884,405	+		SO4685	0.79	+1.3
4,884,439	-		SO4685	0.82	+3.4
4,884,448	+		SO4685	0.82	+2.9
4,884,466	-		SO4685	0.83	+0.4
4,884,474	+		SO4685	0.84	-0.1
4,884,488	-		SO4685	0.85	-0.6
4,884,522	+		SO4685	0.87	+1.0
4,884,530	-		SO4685	0.88	+1.7
4,884,592	+				+2.1
4,884,611	+				+2.0
4,884,611	+				+1.4
4,884,611	+				+4.1
4,884,621	+				+1.3
4,884,629	-				+0.7
4,884,635	+				+0.5
4,884,701	-				-1.0
4,885,121	+				-1.2
4,885,153	+		SO4686	0.11	+1.0
4,885,163	+		SO4686	0.12	-0.4
4,885,163	+		SO4686	0.12	-0.5
4,885,255	+		SO4686	0.21	-2.1
4,885,258	-		SO4686	0.22	-3.1
4,885,291	+		SO4686	0.25	-0.8
4,885,331	-		SO4686	0.29	-1.4
4,885,331	-		SO4686	0.29	-0.6
4,885,351	-		SO4686	0.31	-2.5
4,885,403	-		SO4686	0.36	-2.2
4,885,479	-		SO4686	0.44	-0.0
4,885,493	+		SO4686	0.45	-1.9
4,885,501	-		SO4686	0.46	-2.9
4,885,501	-		SO4686	0.46	+1.2
4,885,505	+		SO4686	0.46	-1.2
4,885,589	+		SO4686	0.55	-3.4
4,885,613	+		SO4686	0.57	-0.5
4,885,710	-		SO4686	0.67	-0.8
4,885,888	+		SO4686	0.84	-1.9
4,885,896	-		SO4686	0.85	-1.5
4,885,919	+		SO4686	0.87	-2.0
4,885,968	+				-1.9
4,885,976	-				-1.5
4,886,003	-				-3.4
4,886,052	+				+0.4
4,886,061	-				+0.2
4,886,236	-	ugd	SO4687	0.14	-1.9
4,886,258	+	ugd	SO4687	0.16	-0.8
4,886,266	-	ugd	SO4687	0.17	+2.5
4,886,278	+	ugd	SO4687	0.18	-2.3
4,886,286	+	ugd	SO4687	0.18	-1.5
4,886,286	-	ugd	SO4687	0.18	-0.3
4,886,286	-	ugd	SO4687	0.18	-2.5
4,886,294	-	ugd	SO4687	0.19	-1.6
4,886,295	+	ugd	SO4687	0.19	-2.7
4,886,305	+	ugd	SO4687	0.20	-3.3
4,886,310	+	ugd	SO4687	0.21	-1.8
4,886,345	+	ugd	SO4687	0.24	-1.3
4,886,345	+	ugd	SO4687	0.24	-0.6
4,886,345	+	ugd	SO4687	0.24	+0.5
4,886,345	+	ugd	SO4687	0.24	-0.7
4,886,353	-	ugd	SO4687	0.24	+1.0
4,886,422	-	ugd	SO4687	0.30	-1.4
4,886,438	+	ugd	SO4687	0.32	-2.3
4,886,438	+	ugd	SO4687	0.32	-3.6
4,886,444	-	ugd	SO4687	0.32	-0.6
4,886,446	-	ugd	SO4687	0.32	-2.8
4,886,446	-	ugd	SO4687	0.32	+1.5
4,886,583	+	ugd	SO4687	0.44	-1.6
4,886,583	+	ugd	SO4687	0.44	-2.2
4,886,583	+	ugd	SO4687	0.44	-1.6
4,886,585	+	ugd	SO4687	0.44	-0.6
4,886,591	-	ugd	SO4687	0.45	-0.0
4,886,599	-	ugd	SO4687	0.45	-0.2
4,886,601	-	ugd	SO4687	0.46	-1.2
4,886,609	-	ugd	SO4687	0.46	-0.9
4,886,739	-	ugd	SO4687	0.57	-2.4
4,886,774	+	ugd	SO4687	0.60	-1.9
4,886,774	+	ugd	SO4687	0.60	-0.8
4,886,774	+	ugd	SO4687	0.60	-1.5
4,886,783	-	ugd	SO4687	0.61	-3.0
4,886,793	+	ugd	SO4687	0.62	-2.4
4,886,867	+	ugd	SO4687	0.68	+0.1