Strain Fitness in Shewanella oneidensis MR-1 around SO4672

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,869,574	-				-0.6
4,869,584	-				-0.4
4,869,610	-				+0.0
4,869,652	-				-0.6
4,869,658	-				+1.1
4,869,667	+				-0.2
4,869,669	-				+1.3
4,869,748	+				+2.3
4,869,838	+	glpG	SO4671	0.15	+0.7
4,869,877	+	glpG	SO4671	0.20	-1.0
4,869,882	+	glpG	SO4671	0.20	-0.8
4,869,890	-	glpG	SO4671	0.21	-2.0
4,869,890	-	glpG	SO4671	0.21	+1.7
4,869,913	-	glpG	SO4671	0.24	+0.6
4,869,938	-	glpG	SO4671	0.27	+0.5
4,869,949	+	glpG	SO4671	0.28	-0.4
4,869,968	+	glpG	SO4671	0.31	-0.9
4,869,986	-	glpG	SO4671	0.33	+0.1
4,869,986	-	glpG	SO4671	0.33	+1.5
4,869,998	-	glpG	SO4671	0.34	-1.3
4,870,119	-	glpG	SO4671	0.49	+0.3
4,870,191	+	glpG	SO4671	0.57	-0.5
4,870,202	+	glpG	SO4671	0.58	-0.1
4,870,218	+	glpG	SO4671	0.60	-0.7
4,870,342	+	glpG	SO4671	0.75	+0.4
4,870,342	+	glpG	SO4671	0.75	-0.6
4,870,350	-	glpG	SO4671	0.76	-0.5
4,870,488	+				+1.5
4,870,488	+				+3.0
4,870,496	-				+0.0
4,870,503	+				-0.6
4,870,508	+				-0.0
4,870,516	-				-1.1
4,870,544	-				-0.5
4,870,610	-	glpE	SO4672	0.20	-2.1
4,870,681	+	glpE	SO4672	0.43	-0.3
4,870,681	+	glpE	SO4672	0.43	-2.3
4,870,804	-	glpE	SO4672	0.83	-2.1
4,870,810	+	glpE	SO4672	0.85	-0.5
4,870,894	-				+1.1
4,870,910	+				-1.0
4,870,913	-				-0.5
4,870,916	+				+1.5
4,870,919	+				+0.0
4,870,924	-				+0.7
4,870,980	+				+1.7
4,871,039	+				+1.8
4,871,058	+	tdh	SO4673	0.10	-0.3
4,871,058	+	tdh	SO4673	0.10	+1.6
4,871,066	-	tdh	SO4673	0.11	-1.5
4,871,066	-	tdh	SO4673	0.11	-0.5
4,871,141	-	tdh	SO4673	0.18	+2.9
4,871,191	-	tdh	SO4673	0.23	+1.1
4,871,276	+	tdh	SO4673	0.31	+0.2
4,871,314	+	tdh	SO4673	0.35	+1.0
4,871,367	+	tdh	SO4673	0.40	+0.2
4,871,372	+	tdh	SO4673	0.41	-0.5
4,871,382	+	tdh	SO4673	0.42	-0.5
4,871,408	-	tdh	SO4673	0.44	+0.9
4,871,478	-	tdh	SO4673	0.51	+0.2
4,871,519	-	tdh	SO4673	0.55	+0.1
4,871,555	-	tdh	SO4673	0.59	-0.3
4,871,616	+	tdh	SO4673	0.65	-2.0
4,871,639	-	tdh	SO4673	0.67	+1.0
4,871,644	+	tdh	SO4673	0.67	+1.3
4,871,645	-	tdh	SO4673	0.67	+0.6
4,871,645	-	tdh	SO4673	0.67	+1.1
4,871,650	-	tdh	SO4673	0.68	+0.2
4,871,650	-	tdh	SO4673	0.68	-0.6
4,871,658	+	tdh	SO4673	0.69	+1.0
4,871,714	-	tdh	SO4673	0.74	+1.4
4,871,714	-	tdh	SO4673	0.74	-0.0