Strain Fitness in Shewanella oneidensis MR-1 around SO4311

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,486,720	-	lysA	SO4309	0.51	-1.4
4,486,724	+	lysA	SO4309	0.51	+0.1
4,486,732	-	lysA	SO4309	0.52	+2.1
4,486,750	+	lysA	SO4309	0.53	-0.2
4,486,772	+	lysA	SO4309	0.55	-0.4
4,486,772	+	lysA	SO4309	0.55	-1.8
4,486,780	-	lysA	SO4309	0.56	-1.1
4,486,806	+	lysA	SO4309	0.58	-0.1
4,486,846	-	lysA	SO4309	0.61	-2.8
4,486,887	-	lysA	SO4309	0.64	-0.9
4,486,940	+	lysA	SO4309	0.68	-0.6
4,487,013	+	lysA	SO4309	0.74	-0.5
4,487,014	+	lysA	SO4309	0.74	-1.1
4,487,115	-	lysA	SO4309	0.82	+0.9
4,487,117	-	lysA	SO4309	0.83	-1.4
4,487,126	-	lysA	SO4309	0.83	-0.8
4,487,140	-	lysA	SO4309	0.84	-1.2
4,487,142	+	lysA	SO4309	0.85	-1.1
4,487,169	-	lysA	SO4309	0.87	+0.9
4,487,169	-	lysA	SO4309	0.87	+0.1
4,487,199	+	lysA	SO4309	0.89	-2.6
4,487,244	+				+0.8
4,487,262	+				+0.6
4,487,265	-				-0.5
4,487,265	-				-0.7
4,487,290	-				-0.4
4,487,291	+				+0.1
4,487,323	+				-1.4
4,487,406	-		SO4310	0.15	+0.6
4,487,413	-		SO4310	0.19	-0.5
4,487,436	-		SO4310	0.31	-0.6
4,487,436	-		SO4310	0.31	-0.9
4,487,470	-		SO4310	0.48	+0.8
4,487,482	+		SO4310	0.54	-1.4
4,487,482	+		SO4310	0.54	-2.0
4,487,490	-		SO4310	0.58	-0.0
4,487,490	-		SO4310	0.58	-0.9
4,487,576	-				+0.5
4,487,874	+	cyaY	SO4311	0.71	+0.6
4,487,882	+	cyaY	SO4311	0.73	-1.0
4,487,890	-	cyaY	SO4311	0.76	+2.6
4,487,933	-	cyaY	SO4311	0.89	+0.0
4,487,948	+				+2.0
4,487,960	+				-0.8
4,487,964	+				+1.0
4,487,968	-				+1.6
4,487,985	-				+0.3
4,488,029	+				-0.6
4,488,029	+				-0.1
4,488,037	-				-1.6
4,488,037	-				-0.2
4,488,049	+				+0.3
4,488,049	+				+0.4
4,488,050	-				+3.0
4,488,335	-		SO4312	0.14	+0.3
4,488,339	+		SO4312	0.14	-1.3
4,488,365	-		SO4312	0.15	-2.9
4,488,399	+		SO4312	0.16	-0.5
4,488,407	-		SO4312	0.17	+0.0
4,488,472	+		SO4312	0.19	-1.4
4,488,472	+		SO4312	0.19	-1.3
4,488,472	+		SO4312	0.19	+0.9
4,488,472	+		SO4312	0.19	+0.9
4,488,480	-		SO4312	0.20	+0.6
4,488,480	-		SO4312	0.20	-0.3
4,488,480	-		SO4312	0.20	-1.1
4,488,501	-		SO4312	0.20	+0.9
4,488,504	-		SO4312	0.21	+0.8
4,488,570	-		SO4312	0.23	+0.2
4,488,570	-		SO4312	0.23	-1.9
4,488,619	-		SO4312	0.25	+0.6
4,488,619	-		SO4312	0.25	-0.1
4,488,685	+		SO4312	0.28	-1.5
4,488,806	+		SO4312	0.33	+0.2
4,488,858	+		SO4312	0.35	-0.7
4,488,858	+		SO4312	0.35	+1.3
4,488,858	+		SO4312	0.35	+0.2
4,488,858	+		SO4312	0.35	-0.7
4,488,866	-		SO4312	0.36	-1.2
4,488,866	-		SO4312	0.36	+1.5
4,488,866	-		SO4312	0.36	-1.5
4,488,868	+		SO4312	0.36	-1.5
4,488,868	+		SO4312	0.36	+0.7
4,488,868	+		SO4312	0.36	+0.9
4,488,868	+		SO4312	0.36	+0.6
4,488,868	+		SO4312	0.36	-0.9
4,488,868	+		SO4312	0.36	-0.3
4,488,874	+		SO4312	0.36	+0.1
4,488,876	-		SO4312	0.36	-1.1
4,488,876	-				+0.6
4,488,924	-		SO4312	0.38	-0.9
4,488,948	+		SO4312	0.39	+0.3
4,488,948	+		SO4312	0.39	+1.3
4,488,958	+		SO4312	0.39	-0.7