Strain Fitness in Shewanella oneidensis MR-1 around SO3842

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,990,038	-		SO3840	0.23	-1.2
3,990,061	+		SO3840	0.28	-0.5
3,990,071	-		SO3840	0.30	+0.4
3,990,154	+		SO3840	0.45	-0.3
3,990,177	-		SO3840	0.49	-0.5
3,990,251	+		SO3840	0.63	-0.4
3,990,264	-		SO3840	0.66	-1.7
3,990,284	-		SO3840	0.69	+0.6
3,990,379	+		SO3840	0.87	-0.5
3,990,379	+		SO3840	0.87	-1.4
3,990,410	+				-0.2
3,990,704	-		SO3841	0.43	-0.8
3,990,749	+		SO3841	0.51	+1.8
3,990,911	+		SO3841	0.78	+0.0
3,991,090	+				-0.5
3,991,311	+		SO3842	0.29	-1.1
3,991,371	+		SO3842	0.35	-1.9
3,991,413	+		SO3842	0.39	-1.4
3,991,424	+		SO3842	0.41	-0.4
3,991,478	+		SO3842	0.46	-0.8
3,991,478	+		SO3842	0.46	+0.2
3,991,478	+		SO3842	0.46	-1.3
3,991,478	+		SO3842	0.46	+0.4
3,991,656	+		SO3842	0.65	-0.0
3,991,668	+		SO3842	0.66	+0.8
3,991,680	+		SO3842	0.67	-0.5
3,991,820	+		SO3842	0.82	+1.8
3,992,109	-				+1.2
3,992,113	+				+1.2
3,992,126	-				-1.2
3,992,166	+		SO_3843	0.14	-0.0
3,992,174	-		SO_3843	0.15	-0.0
3,992,241	+		SO_3843	0.25	-0.2
3,992,270	+		SO_3843	0.29	-0.6
3,992,395	+		SO_3843	0.47	-0.2
3,992,439	-		SO_3843	0.53	-0.2
3,992,470	+		SO_3843	0.57	+1.4
3,992,503	+		SO_3843	0.62	+0.2
3,992,511	-		SO_3843	0.63	-0.5
3,992,516	-		SO_3843	0.64	-0.1
3,992,546	-		SO_3843	0.68	-1.3
3,992,556	-		SO_3843	0.69	+0.6
3,992,563	-		SO_3843	0.70	+2.0
3,992,563	-		SO_3843	0.70	+0.5
3,992,565	+		SO_3843	0.71	-1.2
3,992,570	+		SO_3843	0.71	+0.4
3,992,573	-		SO_3843	0.72	+0.3
3,992,573	-		SO_3843	0.72	-0.8
3,992,632	-		SO_3843	0.80	+2.6
3,992,750	+				-0.7
3,992,796	+				-0.5