Strain Fitness in Shewanella oneidensis MR-1 around SO1468

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,532,054	+				-2.4
1,532,060	+				-0.2
1,532,068	-				-1.3
1,532,078	-				+1.3
1,532,113	-				+0.8
1,532,113	-				-2.0
1,532,115	+				+1.1
1,532,199	-				+0.1
1,532,203	+				-0.9
1,532,203	+				-0.4
1,532,243	+				-0.8
1,532,253	+				+0.4
1,532,253	+				-0.4
1,532,261	-				+0.1
1,532,282	+				-0.0
1,532,341	+				-0.0
1,532,367	-				+0.1
1,532,455	-				-0.1
1,532,660	+		SO_1467	0.22	+0.4
1,532,810	-		SO_1467	0.55	+0.4
1,532,940	+		SO_1467	0.83	-0.1
1,532,972	+				-1.3
1,532,972	+				-1.6
1,532,972	+				+2.4
1,532,972	+				+0.6
1,532,972	+				-1.0
1,532,972	+				-0.6
1,532,977	+				+1.2
1,532,980	-				+0.2
1,532,980	-				-2.4
1,532,985	-				-0.5
1,533,009	+				-0.5
1,533,010	+				-0.8
1,533,056	+				-0.6
1,533,082	+				-0.1
1,533,090	+				+0.4
1,533,090	+				-0.7
1,533,098	-				-0.4
1,533,098	-				+0.4
1,533,098	-				-1.0
1,533,103	-				-1.3
1,533,109	+				-0.4
1,533,111	-				+0.2
1,533,112	-				+0.1
1,533,148	+		SO1468	0.12	+0.7
1,533,305	+		SO1468	0.27	+0.7
1,533,324	-		SO1468	0.28	+0.2
1,533,324	-		SO1468	0.28	-0.8
1,533,365	+		SO1468	0.32	+0.7
1,533,365	+		SO1468	0.32	+0.3
1,533,365	+		SO1468	0.32	-0.2
1,533,370	+		SO1468	0.33	-0.7
1,533,404	-		SO1468	0.36	-0.2
1,533,404	-		SO1468	0.36	+0.5
1,533,404	-		SO1468	0.36	-0.2
1,533,404	-		SO1468	0.36	-0.4
1,533,421	+		SO1468	0.37	+1.0
1,533,483	+		SO1468	0.43	+1.5
1,533,483	+		SO1468	0.43	+0.7
1,533,490	+		SO1468	0.44	+2.2
1,533,491	-		SO1468	0.44	-0.3
1,533,675	+		SO1468	0.61	+1.2
1,533,690	-		SO1468	0.63	-0.6
1,533,692	+		SO1468	0.63	+0.2
1,533,700	-		SO1468	0.64	-1.9
1,533,700	-		SO1468	0.64	+1.1
1,533,718	+		SO1468	0.65	+0.4
1,533,829	+		SO1468	0.76	+0.5
1,533,829	+		SO1468	0.76	+0.0
1,533,883	-		SO1468	0.81	+0.4
1,533,937	+		SO1468	0.86	-0.3
1,533,942	+		SO1468	0.87	+0.6
1,533,950	-		SO1468	0.87	+0.2
1,534,035	+				+0.2
1,534,057	-				+0.3
1,534,214	+		SO1469	0.29	-0.3
1,534,306	+		SO1469	0.65	-0.2
1,534,308	+		SO1469	0.66	+0.0
1,534,308	+		SO1469	0.66	+1.8
1,534,358	+		SO1469	0.86	-0.7
1,534,448	+				+0.1
1,534,448	+				-0.5
1,534,448	+				+0.6
1,534,456	-				+1.1
1,534,456	-				-1.6
1,534,469	+				-0.5
1,534,477	-				-0.1
1,534,477	-				+0.4
1,534,477	-				-1.0
1,534,549	-				+1.2
1,534,549	-				+1.4
1,534,671	-				-0.7
1,534,695	+				-0.5
1,534,732	-				-2.2
1,534,765	+				-1.2
1,534,797	+				-0.4
1,534,810	+				+0.1
1,534,810	+				-2.3
1,534,810	-				-0.1
1,534,818	-				+1.5
1,534,865	-				+0.9
1,534,890	+				+0.6
1,534,890	+				-0.5
1,534,963	+				-0.4
1,534,971	-				-0.0
1,534,971	-				-2.2
1,534,983	+				-0.4
1,534,999	-				-1.4