Strain Fitness in Shewanella oneidensis MR-1 around SO3402

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,540,236	-				+2.8
3,540,238	+				+0.1
3,540,238	-				+1.3
3,540,244	+				-0.2
3,540,261	-				-2.3
3,540,261	-				+1.1
3,540,440	+				+0.2
3,540,440	+				-1.5
3,540,458	-				-0.2
3,540,569	-		SO3401	0.18	+0.2
3,540,612	+		SO3401	0.24	-0.1
3,540,626	-		SO3401	0.26	+1.1
3,540,647	+		SO3401	0.29	+1.5
3,540,648	+		SO3401	0.29	-0.5
3,540,728	+		SO3401	0.40	-1.5
3,540,738	-		SO3401	0.41	-1.2
3,540,757	+		SO3401	0.44	+0.2
3,540,757	+		SO3401	0.44	+1.8
3,540,768	+		SO3401	0.46	-0.7
3,540,775	-		SO3401	0.47	+2.2
3,540,808	-		SO3401	0.51	-0.3
3,540,814	+		SO3401	0.52	+0.6
3,541,049	-		SO3401	0.85	+0.2
3,541,237	-				-1.4
3,541,255	+		SO3402	0.23	-0.2
3,541,263	-		SO3402	0.29	-3.0
3,541,351	+				+0.6
3,541,383	-				+0.1
3,541,605	+				+0.6
3,541,605	+				-1.6
3,541,649	-				-1.4
3,541,752	+				+1.2
3,541,851	+	yfiA-1	SO3403	0.23	+0.0
3,542,066	-	yfiA-1	SO3403	0.83	+1.0
3,542,114	+				+2.2