Strain Fitness in Shewanella oneidensis MR-1 around SO2566

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,695,168	+				+1.6
2,695,251	+				-0.3
2,695,373	+				+1.5
2,695,444	-				+2.7
2,695,484	+				-0.3
2,695,634	-		SO2565	0.26	+0.9
2,695,697	+		SO2565	0.35	+0.9
2,695,705	-		SO2565	0.37	+1.1
2,695,842	-		SO2565	0.58	-0.0
2,695,911	-		SO2565	0.69	-0.7
2,695,988	-		SO2565	0.80	+0.4
2,696,036	+		SO2565	0.88	-1.8
2,696,124	-				+1.5
2,696,247	+				+0.0
2,696,297	+				+0.6
2,696,297	+				-0.9
2,696,297	+				+0.0
2,696,375	-	asmA	SO2566	0.14	+0.6
2,696,483	-	asmA	SO2566	0.20	+1.2
2,696,493	-	asmA	SO2566	0.21	+2.5
2,696,511	-	asmA	SO2566	0.22	+1.8
2,696,822	-	asmA	SO2566	0.39	-0.3
2,696,824	+	asmA	SO2566	0.39	-1.1
2,696,832	-	asmA	SO2566	0.39	-0.5
2,696,946	+	asmA	SO2566	0.46	+2.2
2,697,233	-	asmA	SO2566	0.61	+0.2
2,697,316	+	asmA	SO2566	0.66	+2.8
2,697,316	+	asmA	SO2566	0.66	-1.0
2,697,316	+	asmA	SO2566	0.66	-0.9
2,697,316	+	asmA	SO2566	0.66	-0.2
2,697,324	-	asmA	SO2566	0.66	+0.7
2,697,324	-	asmA	SO2566	0.66	-0.4
2,697,324	-	asmA	SO2566	0.66	-0.2
2,697,371	-	asmA	SO2566	0.69	+0.7
2,697,397	+	asmA	SO2566	0.70	+1.2
2,697,476	-	asmA	SO2566	0.75	-0.5
2,697,478	+	asmA	SO2566	0.75	+0.8
2,697,478	+	asmA	SO2566	0.75	+1.8
2,697,486	-	asmA	SO2566	0.75	-0.7
2,697,486	-	asmA	SO2566	0.75	-0.1
2,697,720	+	asmA	SO2566	0.88	+1.9
2,697,728	-	asmA	SO2566	0.88	-1.1
2,697,782	+				+0.8
2,697,874	+				+2.4
2,697,882	-				-0.4
2,697,882	-				+1.4
2,697,882	-				+0.4
2,697,882	-				+0.3
2,698,053	+	menG-1	SO2567	0.15	-1.4
2,698,172	-	menG-1	SO2567	0.39	+1.6
2,698,293	-	menG-1	SO2567	0.64	+1.6
2,698,322	-	menG-1	SO2567	0.69	-0.4
2,698,351	-	menG-1	SO2567	0.75	+0.1
2,698,471	-				+2.4
2,698,476	+				+0.0
2,698,495	+				+0.9
2,698,495	+				-0.3
2,698,503	-				+0.0
2,698,503	-				+0.6
2,698,507	+				+1.8
2,698,512	-				+1.2
2,698,512	-				+1.1
2,698,514	-				+1.3
2,698,528	+				+0.8
2,698,535	-				-0.2
2,698,566	+				-0.7
2,698,566	+				+1.6
2,698,566	+				+1.2
2,698,574	-				+0.0
2,698,590	-				-0.9
2,698,612	+				+0.8
2,698,612	+				+1.8
2,698,620	-				-0.1
2,698,629	+				+1.8
2,698,629	+				-0.1
2,698,629	+				+2.1
2,698,629	+				+0.5
2,698,629	+				+0.3
2,698,629	+				+0.2
2,698,631	+				+1.3
2,698,637	-				-1.9
2,698,637	-				+1.6
2,698,637	-				-0.2
2,698,637	-				+1.1
2,698,637	-				-0.5
2,698,637	-				+1.3
2,698,638	-				+2.4
2,698,709	+				-0.2
2,698,836	+		SO2569	0.42	-0.6