Strain Fitness in Shewanella oneidensis MR-1 around SO0931

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttkt and epd are separated by 128 nucleotidesepd and pgk are separated by 133 nucleotides SO0930: tkt - transketolase (NCBI ptt file), at 959,616 to 961,610 tkt SO0931: epd - D-erythrose-4-phosphate dehydrogenase (NCBI ptt file), at 961,739 to 962,755 epd SO0932: pgk - phosphoglycerate kinase (NCBI ptt file), at 962,889 to 964,064 pgk Position (kb) 961 962 963Strain fitness (log2 ratio) -2 -1 0 1 2at 961.648 kb on - strandat 961.677 kb on + strandat 961.855 kb on + strand, within epdat 961.890 kb on - strand, within epdat 962.138 kb on - strand, within epdat 962.145 kb on - strand, within epdat 962.522 kb on + strand, within epdat 962.566 kb on - strand, within epdat 962.576 kb on - strand, within epdat 962.637 kb on + strand, within epdat 962.641 kb on - strand, within epdat 962.734 kb on + strandat 962.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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961,648 - -0.1
961,677 + -1.9
961,855 + epd SO0931 0.11 +0.9
961,890 - epd SO0931 0.15 -1.0
962,138 - epd SO0931 0.39 -1.5
962,145 - epd SO0931 0.40 +2.4
962,522 + epd SO0931 0.77 +2.4
962,566 - epd SO0931 0.81 +0.1
962,576 - epd SO0931 0.82 +0.4
962,637 + epd SO0931 0.88 -0.7
962,641 - epd SO0931 0.89 +0.1
962,734 + +1.2
962,776 + -0.4

Or see this region's nucleotide sequence