Strain Fitness in Shewanella oneidensis MR-1 around SO_3579

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,745,167	+				+0.2
3,745,175	-				+0.4
3,745,185	-				+0.2
3,745,185	-				+1.0
3,745,242	-		SO3578	0.10	+0.1
3,745,332	-		SO3578	0.22	-1.7
3,745,349	-		SO3578	0.24	-0.3
3,745,392	+		SO3578	0.30	-1.9
3,745,404	+		SO3578	0.31	-0.3
3,745,431	+		SO3578	0.35	+0.4
3,745,489	+		SO3578	0.42	-0.0
3,745,506	-		SO3578	0.44	-0.7
3,745,510	+		SO3578	0.45	-1.2
3,745,518	-		SO3578	0.46	+0.5
3,745,536	+		SO3578	0.48	+0.7
3,745,544	-		SO3578	0.49	+0.2
3,745,705	-		SO3578	0.70	+0.9
3,745,722	+		SO3578	0.72	-1.1
3,745,730	+		SO3578	0.73	+0.7
3,745,748	-		SO3578	0.76	-0.6
3,745,762	-		SO3578	0.78	-0.6
3,745,766	+		SO3578	0.78	-0.3
3,745,768	+		SO3578	0.78	-1.6
3,745,814	+		SO3578	0.84	-0.3
3,745,849	+		SO3578	0.89	+1.8
3,745,857	+		SO3578	0.90	+0.0
3,745,857	-		SO3578	0.90	+1.5
3,745,865	-				-0.7
3,745,865	-				+0.5
3,745,865	-				+0.1
3,745,906	+				-0.5
3,746,008	+				-0.5
3,746,036	-				-0.7
3,746,038	+		SO_3579	0.10	-0.3
3,746,071	+		SO_3579	0.14	+0.5
3,746,281	-		SO_3579	0.35	-0.8
3,746,486	-		SO_3579	0.56	-0.7
3,746,503	+		SO_3579	0.58	-0.1
3,746,556	-		SO_3579	0.63	-0.5
3,746,568	+		SO_3579	0.65	-0.5
3,746,609	-		SO_3579	0.69	-0.3
3,746,713	-		SO_3579	0.80	-1.7
3,746,854	+				-2.0
3,746,862	-				-2.7
3,747,875	+		SO3581	0.42	+0.4