Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1156

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1155 and Psest_1156 are separated by 81 nucleotidesPsest_1156 and Psest_1157 are separated by 2 nucleotides Psest_1155: Psest_1155 - Methyl-accepting chemotaxis protein, at 1,254,172 to 1,255,794 _1155 Psest_1156: Psest_1156 - outer membrane component of uptake system, probably for ferrous iron (from data), at 1,255,876 to 1,256,970 _1156 Psest_1157: Psest_1157 - Predicted periplasmic lipoprotein, at 1,256,973 to 1,258,049 _1157 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1255.388 kb on + strand, within Psest_1155at 1255.388 kb on + strand, within Psest_1155at 1255.388 kb on + strand, within Psest_1155at 1255.388 kb on + strand, within Psest_1155at 1255.388 kb on + strand, within Psest_1155at 1255.388 kb on + strand, within Psest_1155at 1255.389 kb on - strand, within Psest_1155at 1255.389 kb on - strand, within Psest_1155at 1255.389 kb on - strand, within Psest_1155at 1255.389 kb on - strand, within Psest_1155at 1255.389 kb on - strand, within Psest_1155at 1255.486 kb on + strand, within Psest_1155at 1255.492 kb on + strand, within Psest_1155at 1255.492 kb on + strand, within Psest_1155at 1255.492 kb on + strand, within Psest_1155at 1255.492 kb on + strand, within Psest_1155at 1255.492 kb on + strand, within Psest_1155at 1255.492 kb on + strand, within Psest_1155at 1255.492 kb on + strand, within Psest_1155at 1255.493 kb on - strand, within Psest_1155at 1255.493 kb on - strand, within Psest_1155at 1255.695 kb on + strandat 1255.808 kb on + strandat 1255.809 kb on - strandat 1255.809 kb on - strandat 1255.809 kb on - strandat 1255.877 kb on + strandat 1255.878 kb on - strandat 1255.878 kb on - strandat 1255.888 kb on + strandat 1255.888 kb on + strandat 1255.888 kb on + strandat 1255.888 kb on + strandat 1255.889 kb on - strandat 1255.889 kb on - strandat 1255.889 kb on - strandat 1255.889 kb on - strandat 1256.088 kb on + strand, within Psest_1156at 1256.088 kb on + strand, within Psest_1156at 1256.151 kb on - strand, within Psest_1156at 1256.258 kb on + strand, within Psest_1156at 1256.259 kb on - strand, within Psest_1156at 1256.601 kb on - strand, within Psest_1156at 1256.601 kb on - strand, within Psest_1156at 1256.601 kb on - strand, within Psest_1156at 1256.601 kb on - strand, within Psest_1156at 1256.640 kb on - strand, within Psest_1156at 1256.640 kb on - strand, within Psest_1156at 1256.705 kb on + strand, within Psest_1156at 1256.705 kb on + strand, within Psest_1156at 1256.706 kb on - strand, within Psest_1156at 1256.706 kb on - strand, within Psest_1156at 1256.706 kb on - strand, within Psest_1156at 1256.754 kb on - strand, within Psest_1156at 1256.754 kb on - strand, within Psest_1156at 1257.067 kb on + strandat 1257.068 kb on - strandat 1257.316 kb on + strand, within Psest_1157at 1257.570 kb on - strand, within Psest_1157at 1257.610 kb on + strand, within Psest_1157at 1257.611 kb on - strand, within Psest_1157at 1257.611 kb on - strand, within Psest_1157at 1257.623 kb on + strand, within Psest_1157at 1257.624 kb on - strand, within Psest_1157at 1257.915 kb on - strand, within Psest_1157at 1257.916 kb on + strand, within Psest_1157at 1257.916 kb on + strand, within Psest_1157at 1257.916 kb on + strand, within Psest_1157at 1257.917 kb on - strand, within Psest_1157at 1257.917 kb on - strand, within Psest_1157at 1257.917 kb on - strand, within Psest_1157at 1257.930 kb on + strand, within Psest_1157at 1257.931 kb on - strand, within Psest_1157

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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1,255,388 + Psest_1155 0.75 +1.4
1,255,388 + Psest_1155 0.75 +2.2
1,255,388 + Psest_1155 0.75 +0.0
1,255,388 + Psest_1155 0.75 -1.1
1,255,388 + Psest_1155 0.75 -0.0
1,255,388 + Psest_1155 0.75 +2.0
1,255,389 - Psest_1155 0.75 +1.2
1,255,389 - Psest_1155 0.75 -2.0
1,255,389 - Psest_1155 0.75 +0.6
1,255,389 - Psest_1155 0.75 -0.3
1,255,389 - Psest_1155 0.75 -0.1
1,255,486 + Psest_1155 0.81 -0.3
1,255,492 + Psest_1155 0.81 -1.2
1,255,492 + Psest_1155 0.81 +2.8
1,255,492 + Psest_1155 0.81 -2.0
1,255,492 + Psest_1155 0.81 +2.3
1,255,492 + Psest_1155 0.81 -0.0
1,255,492 + Psest_1155 0.81 +0.3
1,255,492 + Psest_1155 0.81 -0.2
1,255,493 - Psest_1155 0.81 -1.0
1,255,493 - Psest_1155 0.81 -1.2
1,255,695 + +2.2
1,255,808 + -0.6
1,255,809 - +0.6
1,255,809 - -1.9
1,255,809 - -0.1
1,255,877 + +0.1
1,255,878 - -0.8
1,255,878 - +1.4
1,255,888 + -1.8
1,255,888 + -1.9
1,255,888 + -1.8
1,255,888 + +1.2
1,255,889 - -3.1
1,255,889 - -3.4
1,255,889 - -0.9
1,255,889 - -1.3
1,256,088 + Psest_1156 0.19 -2.6
1,256,088 + Psest_1156 0.19 -1.5
1,256,151 - Psest_1156 0.25 -2.6
1,256,258 + Psest_1156 0.35 -1.5
1,256,259 - Psest_1156 0.35 -1.6
1,256,601 - Psest_1156 0.66 -0.5
1,256,601 - Psest_1156 0.66 -0.9
1,256,601 - Psest_1156 0.66 -1.5
1,256,601 - Psest_1156 0.66 -0.7
1,256,640 - Psest_1156 0.70 -1.6
1,256,640 - Psest_1156 0.70 -2.0
1,256,705 + Psest_1156 0.76 +1.6
1,256,705 + Psest_1156 0.76 -1.1
1,256,706 - Psest_1156 0.76 -0.1
1,256,706 - Psest_1156 0.76 -1.8
1,256,706 - Psest_1156 0.76 -1.3
1,256,754 - Psest_1156 0.80 -0.4
1,256,754 - Psest_1156 0.80 -1.2
1,257,067 + -0.2
1,257,068 - -0.8
1,257,316 + Psest_1157 0.32 -2.5
1,257,570 - Psest_1157 0.55 -0.7
1,257,610 + Psest_1157 0.59 -2.7
1,257,611 - Psest_1157 0.59 -2.0
1,257,611 - Psest_1157 0.59 -1.4
1,257,623 + Psest_1157 0.60 -3.1
1,257,624 - Psest_1157 0.60 -2.4
1,257,915 - Psest_1157 0.87 -1.1
1,257,916 + Psest_1157 0.88 -1.9
1,257,916 + Psest_1157 0.88 +1.5
1,257,916 + Psest_1157 0.88 +0.6
1,257,917 - Psest_1157 0.88 +0.5
1,257,917 - Psest_1157 0.88 -1.1
1,257,917 - Psest_1157 0.88 -0.5
1,257,930 + Psest_1157 0.89 +0.3
1,257,931 - Psest_1157 0.89 -1.9

Or see this region's nucleotide sequence