Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00650

Experiment: LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00649 and MPMX20_00650 are separated by 269 nucleotidesMPMX20_00650 and MPMX20_00651 are separated by 85 nucleotidesMPMX20_00651 and MPMX20_00652 overlap by 4 nucleotides MPMX20_00649: MPMX20_00649 - Phosphoglycerol transferase I, at 674,031 to 676,322 _00649 MPMX20_00650: MPMX20_00650 - hypothetical protein, at 676,592 to 677,074 _00650 MPMX20_00651: MPMX20_00651 - DNA replication protein DnaC, at 677,160 to 677,897 _00651 MPMX20_00652: MPMX20_00652 - Primosomal protein 1, at 677,894 to 678,439 _00652 Position (kb) 676 677 678Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 675.595 kb on - strand, within MPMX20_00649at 675.609 kb on + strand, within MPMX20_00649at 675.623 kb on - strand, within MPMX20_00649at 675.636 kb on - strand, within MPMX20_00649at 675.636 kb on - strand, within MPMX20_00649at 675.636 kb on - strand, within MPMX20_00649at 675.643 kb on - strand, within MPMX20_00649at 675.658 kb on + strand, within MPMX20_00649at 675.661 kb on + strand, within MPMX20_00649at 675.690 kb on + strand, within MPMX20_00649at 675.690 kb on + strand, within MPMX20_00649at 675.690 kb on + strand, within MPMX20_00649at 675.690 kb on + strand, within MPMX20_00649at 675.690 kb on + strand, within MPMX20_00649at 675.690 kb on + strand, within MPMX20_00649at 675.698 kb on - strand, within MPMX20_00649at 675.698 kb on - strand, within MPMX20_00649at 675.699 kb on - strand, within MPMX20_00649at 675.700 kb on + strand, within MPMX20_00649at 675.728 kb on + strand, within MPMX20_00649at 675.731 kb on - strand, within MPMX20_00649at 675.793 kb on + strand, within MPMX20_00649at 675.793 kb on + strand, within MPMX20_00649at 675.796 kb on - strand, within MPMX20_00649at 675.811 kb on + strand, within MPMX20_00649at 675.822 kb on + strand, within MPMX20_00649at 675.830 kb on - strand, within MPMX20_00649at 675.846 kb on - strand, within MPMX20_00649at 675.846 kb on - strand, within MPMX20_00649at 675.869 kb on + strand, within MPMX20_00649at 675.873 kb on + strand, within MPMX20_00649at 675.908 kb on + strand, within MPMX20_00649at 675.908 kb on + strand, within MPMX20_00649at 675.913 kb on + strand, within MPMX20_00649at 675.916 kb on - strand, within MPMX20_00649at 675.976 kb on - strand, within MPMX20_00649at 675.997 kb on - strand, within MPMX20_00649at 676.024 kb on - strand, within MPMX20_00649at 676.046 kb on - strand, within MPMX20_00649at 676.046 kb on - strand, within MPMX20_00649at 676.076 kb on + strand, within MPMX20_00649at 676.076 kb on + strand, within MPMX20_00649at 676.076 kb on + strand, within MPMX20_00649at 676.084 kb on - strand, within MPMX20_00649at 676.091 kb on + strand, within MPMX20_00649at 676.091 kb on - strand, within MPMX20_00649at 676.095 kb on + strandat 676.106 kb on + strandat 676.129 kb on - strandat 676.135 kb on + strandat 676.143 kb on - strandat 676.190 kb on + strandat 676.231 kb on - strandat 676.270 kb on - strandat 676.277 kb on - strandat 676.285 kb on - strandat 676.285 kb on - strandat 676.308 kb on + strandat 676.316 kb on - strandat 676.316 kb on - strandat 676.324 kb on + strandat 676.324 kb on + strandat 676.324 kb on + strandat 676.329 kb on + strandat 676.331 kb on - strandat 676.353 kb on - strandat 676.568 kb on + strandat 676.627 kb on + strandat 676.643 kb on - strand, within MPMX20_00650at 676.667 kb on + strand, within MPMX20_00650at 676.667 kb on - strand, within MPMX20_00650at 676.769 kb on - strand, within MPMX20_00650at 676.784 kb on - strand, within MPMX20_00650at 676.884 kb on + strand, within MPMX20_00650at 677.004 kb on + strand, within MPMX20_00650at 677.039 kb on + strandat 677.049 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.129 kb on - strandat 677.129 kb on - strandat 677.129 kb on - strandat 677.129 kb on - strandat 677.129 kb on - strandat 677.129 kb on - strandat 677.129 kb on - strandat 677.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB plate, 1:1 coculture with Pseudomonas_plecoglossicida_TBS_049
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675,595 - MPMX20_00649 0.68 -1.0
675,609 + MPMX20_00649 0.69 +1.1
675,623 - MPMX20_00649 0.69 -0.7
675,636 - MPMX20_00649 0.70 +0.7
675,636 - MPMX20_00649 0.70 +3.0
675,636 - MPMX20_00649 0.70 -1.5
675,643 - MPMX20_00649 0.70 +0.2
675,658 + MPMX20_00649 0.71 +1.0
675,661 + MPMX20_00649 0.71 -0.6
675,690 + MPMX20_00649 0.72 +3.0
675,690 + MPMX20_00649 0.72 -0.6
675,690 + MPMX20_00649 0.72 -0.2
675,690 + MPMX20_00649 0.72 -2.2
675,690 + MPMX20_00649 0.72 -2.1
675,690 + MPMX20_00649 0.72 +1.4
675,698 - MPMX20_00649 0.73 -2.3
675,698 - MPMX20_00649 0.73 -2.1
675,699 - MPMX20_00649 0.73 +0.7
675,700 + MPMX20_00649 0.73 -2.5
675,728 + MPMX20_00649 0.74 -1.3
675,731 - MPMX20_00649 0.74 -1.3
675,793 + MPMX20_00649 0.77 -1.8
675,793 + MPMX20_00649 0.77 -0.7
675,796 - MPMX20_00649 0.77 -3.4
675,811 + MPMX20_00649 0.78 +2.3
675,822 + MPMX20_00649 0.78 +3.0
675,830 - MPMX20_00649 0.78 -0.8
675,846 - MPMX20_00649 0.79 -1.4
675,846 - MPMX20_00649 0.79 +0.1
675,869 + MPMX20_00649 0.80 -0.9
675,873 + MPMX20_00649 0.80 -0.5
675,908 + MPMX20_00649 0.82 -0.4
675,908 + MPMX20_00649 0.82 +0.2
675,913 + MPMX20_00649 0.82 +0.1
675,916 - MPMX20_00649 0.82 -0.2
675,976 - MPMX20_00649 0.85 -1.8
675,997 - MPMX20_00649 0.86 +1.3
676,024 - MPMX20_00649 0.87 +0.7
676,046 - MPMX20_00649 0.88 -1.2
676,046 - MPMX20_00649 0.88 -0.8
676,076 + MPMX20_00649 0.89 -0.3
676,076 + MPMX20_00649 0.89 -1.1
676,076 + MPMX20_00649 0.89 +0.7
676,084 - MPMX20_00649 0.90 -0.5
676,091 + MPMX20_00649 0.90 +0.3
676,091 - MPMX20_00649 0.90 -2.0
676,095 + +0.4
676,106 + -0.7
676,129 - +1.4
676,135 + -1.0
676,143 - -0.2
676,190 + +0.5
676,231 - -1.2
676,270 - +1.6
676,277 - -1.8
676,285 - +0.0
676,285 - -1.3
676,308 + +0.1
676,316 - +0.6
676,316 - -1.8
676,324 + +1.4
676,324 + +3.0
676,324 + -2.6
676,329 + -3.5
676,331 - -0.7
676,353 - -1.4
676,568 + +0.8
676,627 + +0.0
676,643 - MPMX20_00650 0.11 -1.2
676,667 + MPMX20_00650 0.16 -2.6
676,667 - MPMX20_00650 0.16 -0.2
676,769 - MPMX20_00650 0.37 +0.7
676,784 - MPMX20_00650 0.40 -2.5
676,884 + MPMX20_00650 0.60 -2.6
677,004 + MPMX20_00650 0.85 +1.1
677,039 + +0.4
677,049 + -1.5
677,121 + -1.2
677,121 + +2.0
677,121 + -0.5
677,121 + -0.7
677,121 + -0.2
677,121 + -0.2
677,121 + -3.9
677,121 + -0.6
677,121 + -0.5
677,121 + -0.4
677,121 + -0.7
677,121 + +1.7
677,121 + +0.5
677,121 + +1.6
677,121 + -2.8
677,121 + -1.7
677,121 + -0.7
677,121 + +1.4
677,129 - +4.0
677,129 - -0.5
677,129 - +1.0
677,129 - -2.5
677,129 - +1.2
677,129 - +1.8
677,129 - -1.5
677,129 - -0.0

Or see this region's nucleotide sequence