Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04269

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04268 and MPMX20_04269 are separated by 240 nucleotidesMPMX20_04269 and MPMX20_04270 overlap by 4 nucleotidesMPMX20_04270 and MPMX20_04271 are separated by 136 nucleotides MPMX20_04268: MPMX20_04268 - Cytosine deaminase, at 4,449,585 to 4,450,901 _04268 MPMX20_04269: MPMX20_04269 - Nitrite reductase [NAD(P)H], at 4,451,142 to 4,453,685 _04269 MPMX20_04270: MPMX20_04270 - Nitrite reductase (NADH) small subunit, at 4,453,682 to 4,454,008 _04270 MPMX20_04271: MPMX20_04271 - Siroheme synthase, at 4,454,145 to 4,455,518 _04271 Position (kb) 4451 4452 4453 4454Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 4450.187 kb on + strand, within MPMX20_04268at 4450.354 kb on + strand, within MPMX20_04268at 4450.362 kb on - strand, within MPMX20_04268at 4450.377 kb on - strand, within MPMX20_04268at 4450.387 kb on + strand, within MPMX20_04268at 4450.517 kb on + strand, within MPMX20_04268at 4450.525 kb on - strand, within MPMX20_04268at 4450.525 kb on - strand, within MPMX20_04268at 4450.525 kb on - strand, within MPMX20_04268at 4450.534 kb on - strand, within MPMX20_04268at 4450.555 kb on + strand, within MPMX20_04268at 4450.563 kb on - strand, within MPMX20_04268at 4450.621 kb on + strand, within MPMX20_04268at 4450.823 kb on + strandat 4450.823 kb on + strandat 4450.831 kb on - strandat 4450.852 kb on - strandat 4450.887 kb on - strandat 4450.889 kb on + strandat 4450.889 kb on + strandat 4450.891 kb on + strandat 4450.891 kb on + strandat 4450.897 kb on - strandat 4450.899 kb on - strandat 4450.935 kb on - strandat 4451.182 kb on - strandat 4451.191 kb on + strandat 4451.217 kb on + strandat 4451.229 kb on - strandat 4451.229 kb on - strandat 4451.236 kb on + strandat 4451.241 kb on + strandat 4451.268 kb on + strandat 4451.268 kb on + strandat 4451.269 kb on - strandat 4451.276 kb on - strandat 4451.276 kb on - strandat 4451.276 kb on - strandat 4451.276 kb on - strandat 4451.276 kb on - strandat 4451.470 kb on + strand, within MPMX20_04269at 4451.477 kb on + strand, within MPMX20_04269at 4451.478 kb on - strand, within MPMX20_04269at 4451.654 kb on - strand, within MPMX20_04269at 4451.699 kb on + strand, within MPMX20_04269at 4451.702 kb on + strand, within MPMX20_04269at 4451.751 kb on + strand, within MPMX20_04269at 4451.759 kb on - strand, within MPMX20_04269at 4451.862 kb on + strand, within MPMX20_04269at 4451.866 kb on + strand, within MPMX20_04269at 4451.909 kb on - strand, within MPMX20_04269at 4452.044 kb on + strand, within MPMX20_04269at 4452.088 kb on + strand, within MPMX20_04269at 4452.115 kb on - strand, within MPMX20_04269at 4452.121 kb on + strand, within MPMX20_04269at 4452.129 kb on - strand, within MPMX20_04269at 4452.129 kb on - strand, within MPMX20_04269at 4452.160 kb on + strand, within MPMX20_04269at 4452.173 kb on + strand, within MPMX20_04269at 4452.214 kb on - strand, within MPMX20_04269at 4452.235 kb on + strand, within MPMX20_04269at 4452.235 kb on + strand, within MPMX20_04269at 4452.235 kb on + strand, within MPMX20_04269at 4452.257 kb on + strand, within MPMX20_04269at 4452.263 kb on - strand, within MPMX20_04269at 4452.263 kb on - strand, within MPMX20_04269at 4452.371 kb on + strand, within MPMX20_04269at 4452.385 kb on + strand, within MPMX20_04269at 4452.431 kb on + strand, within MPMX20_04269at 4452.431 kb on + strand, within MPMX20_04269at 4452.526 kb on - strand, within MPMX20_04269at 4452.561 kb on - strand, within MPMX20_04269at 4452.584 kb on + strand, within MPMX20_04269at 4452.586 kb on + strand, within MPMX20_04269at 4452.613 kb on + strand, within MPMX20_04269at 4452.633 kb on + strand, within MPMX20_04269at 4452.693 kb on + strand, within MPMX20_04269at 4452.700 kb on + strand, within MPMX20_04269at 4452.700 kb on + strand, within MPMX20_04269at 4452.759 kb on - strand, within MPMX20_04269at 4452.781 kb on - strand, within MPMX20_04269at 4452.805 kb on - strand, within MPMX20_04269at 4452.910 kb on + strand, within MPMX20_04269at 4452.940 kb on - strand, within MPMX20_04269at 4452.945 kb on - strand, within MPMX20_04269at 4453.141 kb on - strand, within MPMX20_04269at 4453.144 kb on + strand, within MPMX20_04269at 4453.148 kb on - strand, within MPMX20_04269at 4453.208 kb on + strand, within MPMX20_04269at 4453.208 kb on + strand, within MPMX20_04269at 4453.208 kb on + strand, within MPMX20_04269at 4453.216 kb on - strand, within MPMX20_04269at 4453.218 kb on - strand, within MPMX20_04269at 4453.242 kb on + strand, within MPMX20_04269at 4453.242 kb on + strand, within MPMX20_04269at 4453.288 kb on + strand, within MPMX20_04269at 4453.288 kb on + strand, within MPMX20_04269at 4453.296 kb on - strand, within MPMX20_04269at 4453.308 kb on + strand, within MPMX20_04269at 4453.338 kb on + strand, within MPMX20_04269at 4453.353 kb on - strand, within MPMX20_04269at 4453.392 kb on - strand, within MPMX20_04269at 4453.394 kb on + strand, within MPMX20_04269at 4453.409 kb on + strand, within MPMX20_04269at 4453.633 kb on - strandat 4453.692 kb on + strandat 4453.728 kb on + strand, within MPMX20_04270at 4453.740 kb on + strand, within MPMX20_04270at 4453.747 kb on + strand, within MPMX20_04270at 4453.795 kb on + strand, within MPMX20_04270at 4453.815 kb on - strand, within MPMX20_04270at 4453.862 kb on + strand, within MPMX20_04270at 4453.870 kb on + strand, within MPMX20_04270at 4453.927 kb on + strand, within MPMX20_04270at 4453.953 kb on - strand, within MPMX20_04270at 4453.960 kb on + strand, within MPMX20_04270at 4453.960 kb on + strand, within MPMX20_04270at 4453.968 kb on - strand, within MPMX20_04270at 4453.999 kb on - strandat 4454.003 kb on + strandat 4454.003 kb on + strandat 4454.004 kb on - strandat 4454.033 kb on + strandat 4454.041 kb on - strandat 4454.078 kb on + strandat 4454.268 kb on + strandat 4454.276 kb on - strandat 4454.324 kb on + strand, within MPMX20_04271at 4454.335 kb on + strand, within MPMX20_04271at 4454.498 kb on - strand, within MPMX20_04271at 4454.622 kb on - strand, within MPMX20_04271at 4454.648 kb on - strand, within MPMX20_04271

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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4,450,187 + MPMX20_04268 0.46 -0.2
4,450,354 + MPMX20_04268 0.58 -2.3
4,450,362 - MPMX20_04268 0.59 +1.5
4,450,377 - MPMX20_04268 0.60 -2.2
4,450,387 + MPMX20_04268 0.61 -0.6
4,450,517 + MPMX20_04268 0.71 -1.0
4,450,525 - MPMX20_04268 0.71 -1.6
4,450,525 - MPMX20_04268 0.71 -0.6
4,450,525 - MPMX20_04268 0.71 +1.4
4,450,534 - MPMX20_04268 0.72 -3.2
4,450,555 + MPMX20_04268 0.74 -2.8
4,450,563 - MPMX20_04268 0.74 -1.7
4,450,621 + MPMX20_04268 0.79 +2.1
4,450,823 + +0.8
4,450,823 + +0.5
4,450,831 - -3.7
4,450,852 - +1.3
4,450,887 - -0.3
4,450,889 + -0.1
4,450,889 + +3.1
4,450,891 + -0.5
4,450,891 + +2.5
4,450,897 - +2.9
4,450,899 - -1.2
4,450,935 - +0.5
4,451,182 - -1.3
4,451,191 + -1.2
4,451,217 + +0.7
4,451,229 - -0.3
4,451,229 - -1.0
4,451,236 + +3.4
4,451,241 + -2.5
4,451,268 + +0.7
4,451,268 + -2.8
4,451,269 - -0.1
4,451,276 - -2.6
4,451,276 - -1.9
4,451,276 - -3.3
4,451,276 - -0.9
4,451,276 - +0.3
4,451,470 + MPMX20_04269 0.13 +2.9
4,451,477 + MPMX20_04269 0.13 -0.5
4,451,478 - MPMX20_04269 0.13 +0.5
4,451,654 - MPMX20_04269 0.20 +0.7
4,451,699 + MPMX20_04269 0.22 -1.2
4,451,702 + MPMX20_04269 0.22 -0.3
4,451,751 + MPMX20_04269 0.24 -0.8
4,451,759 - MPMX20_04269 0.24 -1.1
4,451,862 + MPMX20_04269 0.28 -1.2
4,451,866 + MPMX20_04269 0.28 +1.0
4,451,909 - MPMX20_04269 0.30 +1.7
4,452,044 + MPMX20_04269 0.35 +0.3
4,452,088 + MPMX20_04269 0.37 +3.4
4,452,115 - MPMX20_04269 0.38 +1.0
4,452,121 + MPMX20_04269 0.38 +3.2
4,452,129 - MPMX20_04269 0.39 +0.2
4,452,129 - MPMX20_04269 0.39 +0.9
4,452,160 + MPMX20_04269 0.40 +0.7
4,452,173 + MPMX20_04269 0.41 -0.1
4,452,214 - MPMX20_04269 0.42 -0.5
4,452,235 + MPMX20_04269 0.43 -0.3
4,452,235 + MPMX20_04269 0.43 +0.9
4,452,235 + MPMX20_04269 0.43 +0.4
4,452,257 + MPMX20_04269 0.44 -0.6
4,452,263 - MPMX20_04269 0.44 -3.1
4,452,263 - MPMX20_04269 0.44 +0.6
4,452,371 + MPMX20_04269 0.48 -1.8
4,452,385 + MPMX20_04269 0.49 -0.7
4,452,431 + MPMX20_04269 0.51 +1.5
4,452,431 + MPMX20_04269 0.51 +0.8
4,452,526 - MPMX20_04269 0.54 +2.9
4,452,561 - MPMX20_04269 0.56 +0.3
4,452,584 + MPMX20_04269 0.57 -0.4
4,452,586 + MPMX20_04269 0.57 -2.1
4,452,613 + MPMX20_04269 0.58 -1.1
4,452,633 + MPMX20_04269 0.59 -0.7
4,452,693 + MPMX20_04269 0.61 +2.7
4,452,700 + MPMX20_04269 0.61 +0.2
4,452,700 + MPMX20_04269 0.61 +3.0
4,452,759 - MPMX20_04269 0.64 +0.4
4,452,781 - MPMX20_04269 0.64 +1.5
4,452,805 - MPMX20_04269 0.65 +8.1
4,452,910 + MPMX20_04269 0.69 -2.1
4,452,940 - MPMX20_04269 0.71 +0.7
4,452,945 - MPMX20_04269 0.71 +0.7
4,453,141 - MPMX20_04269 0.79 +1.3
4,453,144 + MPMX20_04269 0.79 -1.2
4,453,148 - MPMX20_04269 0.79 -0.8
4,453,208 + MPMX20_04269 0.81 -1.1
4,453,208 + MPMX20_04269 0.81 -0.8
4,453,208 + MPMX20_04269 0.81 -2.3
4,453,216 - MPMX20_04269 0.82 +2.2
4,453,218 - MPMX20_04269 0.82 +2.9
4,453,242 + MPMX20_04269 0.83 -1.3
4,453,242 + MPMX20_04269 0.83 -1.5
4,453,288 + MPMX20_04269 0.84 +1.9
4,453,288 + MPMX20_04269 0.84 -0.4
4,453,296 - MPMX20_04269 0.85 -0.3
4,453,308 + MPMX20_04269 0.85 -0.6
4,453,338 + MPMX20_04269 0.86 -1.8
4,453,353 - MPMX20_04269 0.87 -0.7
4,453,392 - MPMX20_04269 0.88 +2.9
4,453,394 + MPMX20_04269 0.89 -1.2
4,453,409 + MPMX20_04269 0.89 +1.2
4,453,633 - +1.2
4,453,692 + +0.6
4,453,728 + MPMX20_04270 0.14 +0.7
4,453,740 + MPMX20_04270 0.18 +0.7
4,453,747 + MPMX20_04270 0.20 +0.9
4,453,795 + MPMX20_04270 0.35 -0.6
4,453,815 - MPMX20_04270 0.41 +0.3
4,453,862 + MPMX20_04270 0.55 -1.3
4,453,870 + MPMX20_04270 0.57 -0.3
4,453,927 + MPMX20_04270 0.75 -0.1
4,453,953 - MPMX20_04270 0.83 -1.1
4,453,960 + MPMX20_04270 0.85 +0.0
4,453,960 + MPMX20_04270 0.85 -1.1
4,453,968 - MPMX20_04270 0.87 -0.6
4,453,999 - +0.7
4,454,003 + +0.2
4,454,003 + +0.0
4,454,004 - +0.5
4,454,033 + -1.8
4,454,041 - +0.5
4,454,078 + -0.1
4,454,268 + -1.6
4,454,276 - -2.2
4,454,324 + MPMX20_04271 0.13 -1.8
4,454,335 + MPMX20_04271 0.14 -1.6
4,454,498 - MPMX20_04271 0.26 -1.2
4,454,622 - MPMX20_04271 0.35 -0.3
4,454,648 - MPMX20_04271 0.37 +0.0

Or see this region's nucleotide sequence