Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04268 and MPMX20_04269 are separated by 240 nucleotides MPMX20_04269 and MPMX20_04270 overlap by 4 nucleotides MPMX20_04270 and MPMX20_04271 are separated by 136 nucleotides
MPMX20_04268: MPMX20_04268 - Cytosine deaminase, at 4,449,585 to 4,450,901
_04268
MPMX20_04269: MPMX20_04269 - Nitrite reductase [NAD(P)H], at 4,451,142 to 4,453,685
_04269
MPMX20_04270: MPMX20_04270 - Nitrite reductase (NADH) small subunit, at 4,453,682 to 4,454,008
_04270
MPMX20_04271: MPMX20_04271 - Siroheme synthase, at 4,454,145 to 4,455,518
_04271
Position (kb)
4451
4452
4453
4454 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4450.187 kb on + strand, within MPMX20_04268 at 4450.354 kb on + strand, within MPMX20_04268 at 4450.362 kb on - strand, within MPMX20_04268 at 4450.377 kb on - strand, within MPMX20_04268 at 4450.387 kb on + strand, within MPMX20_04268 at 4450.517 kb on + strand, within MPMX20_04268 at 4450.525 kb on - strand, within MPMX20_04268 at 4450.525 kb on - strand, within MPMX20_04268 at 4450.525 kb on - strand, within MPMX20_04268 at 4450.534 kb on - strand, within MPMX20_04268 at 4450.555 kb on + strand, within MPMX20_04268 at 4450.563 kb on - strand, within MPMX20_04268 at 4450.621 kb on + strand, within MPMX20_04268 at 4450.823 kb on + strand at 4450.823 kb on + strand at 4450.831 kb on - strand at 4450.852 kb on - strand at 4450.887 kb on - strand at 4450.889 kb on + strand at 4450.889 kb on + strand at 4450.891 kb on + strand at 4450.891 kb on + strand at 4450.897 kb on - strand at 4450.899 kb on - strand at 4450.935 kb on - strand at 4451.182 kb on - strand at 4451.191 kb on + strand at 4451.217 kb on + strand at 4451.229 kb on - strand at 4451.229 kb on - strand at 4451.236 kb on + strand at 4451.241 kb on + strand at 4451.268 kb on + strand at 4451.268 kb on + strand at 4451.269 kb on - strand at 4451.276 kb on - strand at 4451.276 kb on - strand at 4451.276 kb on - strand at 4451.276 kb on - strand at 4451.276 kb on - strand at 4451.470 kb on + strand, within MPMX20_04269 at 4451.477 kb on + strand, within MPMX20_04269 at 4451.478 kb on - strand, within MPMX20_04269 at 4451.654 kb on - strand, within MPMX20_04269 at 4451.699 kb on + strand, within MPMX20_04269 at 4451.702 kb on + strand, within MPMX20_04269 at 4451.751 kb on + strand, within MPMX20_04269 at 4451.759 kb on - strand, within MPMX20_04269 at 4451.862 kb on + strand, within MPMX20_04269 at 4451.866 kb on + strand, within MPMX20_04269 at 4451.909 kb on - strand, within MPMX20_04269 at 4452.044 kb on + strand, within MPMX20_04269 at 4452.088 kb on + strand, within MPMX20_04269 at 4452.115 kb on - strand, within MPMX20_04269 at 4452.121 kb on + strand, within MPMX20_04269 at 4452.129 kb on - strand, within MPMX20_04269 at 4452.129 kb on - strand, within MPMX20_04269 at 4452.160 kb on + strand, within MPMX20_04269 at 4452.173 kb on + strand, within MPMX20_04269 at 4452.214 kb on - strand, within MPMX20_04269 at 4452.235 kb on + strand, within MPMX20_04269 at 4452.235 kb on + strand, within MPMX20_04269 at 4452.235 kb on + strand, within MPMX20_04269 at 4452.257 kb on + strand, within MPMX20_04269 at 4452.263 kb on - strand, within MPMX20_04269 at 4452.263 kb on - strand, within MPMX20_04269 at 4452.371 kb on + strand, within MPMX20_04269 at 4452.385 kb on + strand, within MPMX20_04269 at 4452.431 kb on + strand, within MPMX20_04269 at 4452.431 kb on + strand, within MPMX20_04269 at 4452.526 kb on - strand, within MPMX20_04269 at 4452.561 kb on - strand, within MPMX20_04269 at 4452.584 kb on + strand, within MPMX20_04269 at 4452.586 kb on + strand, within MPMX20_04269 at 4452.613 kb on + strand, within MPMX20_04269 at 4452.633 kb on + strand, within MPMX20_04269 at 4452.693 kb on + strand, within MPMX20_04269 at 4452.700 kb on + strand, within MPMX20_04269 at 4452.700 kb on + strand, within MPMX20_04269 at 4452.759 kb on - strand, within MPMX20_04269 at 4452.781 kb on - strand, within MPMX20_04269 at 4452.805 kb on - strand, within MPMX20_04269 at 4452.910 kb on + strand, within MPMX20_04269 at 4452.940 kb on - strand, within MPMX20_04269 at 4452.945 kb on - strand, within MPMX20_04269 at 4453.141 kb on - strand, within MPMX20_04269 at 4453.144 kb on + strand, within MPMX20_04269 at 4453.148 kb on - strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.216 kb on - strand, within MPMX20_04269 at 4453.218 kb on - strand, within MPMX20_04269 at 4453.242 kb on + strand, within MPMX20_04269 at 4453.242 kb on + strand, within MPMX20_04269 at 4453.288 kb on + strand, within MPMX20_04269 at 4453.288 kb on + strand, within MPMX20_04269 at 4453.296 kb on - strand, within MPMX20_04269 at 4453.308 kb on + strand, within MPMX20_04269 at 4453.338 kb on + strand, within MPMX20_04269 at 4453.353 kb on - strand, within MPMX20_04269 at 4453.392 kb on - strand, within MPMX20_04269 at 4453.394 kb on + strand, within MPMX20_04269 at 4453.409 kb on + strand, within MPMX20_04269 at 4453.633 kb on - strand at 4453.692 kb on + strand at 4453.728 kb on + strand, within MPMX20_04270 at 4453.740 kb on + strand, within MPMX20_04270 at 4453.747 kb on + strand, within MPMX20_04270 at 4453.795 kb on + strand, within MPMX20_04270 at 4453.815 kb on - strand, within MPMX20_04270 at 4453.862 kb on + strand, within MPMX20_04270 at 4453.870 kb on + strand, within MPMX20_04270 at 4453.927 kb on + strand, within MPMX20_04270 at 4453.953 kb on - strand, within MPMX20_04270 at 4453.960 kb on + strand, within MPMX20_04270 at 4453.960 kb on + strand, within MPMX20_04270 at 4453.968 kb on - strand, within MPMX20_04270 at 4453.999 kb on - strand at 4454.003 kb on + strand at 4454.003 kb on + strand at 4454.004 kb on - strand at 4454.033 kb on + strand at 4454.041 kb on - strand at 4454.078 kb on + strand at 4454.268 kb on + strand at 4454.276 kb on - strand at 4454.324 kb on + strand, within MPMX20_04271 at 4454.335 kb on + strand, within MPMX20_04271 at 4454.498 kb on - strand, within MPMX20_04271 at 4454.622 kb on - strand, within MPMX20_04271 at 4454.648 kb on - strand, within MPMX20_04271
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2 remove 4,450,187 + MPMX20_04268 0.46 -0.2 4,450,354 + MPMX20_04268 0.58 -2.3 4,450,362 - MPMX20_04268 0.59 +1.5 4,450,377 - MPMX20_04268 0.60 -2.2 4,450,387 + MPMX20_04268 0.61 -0.6 4,450,517 + MPMX20_04268 0.71 -1.0 4,450,525 - MPMX20_04268 0.71 -1.6 4,450,525 - MPMX20_04268 0.71 -0.6 4,450,525 - MPMX20_04268 0.71 +1.4 4,450,534 - MPMX20_04268 0.72 -3.2 4,450,555 + MPMX20_04268 0.74 -2.8 4,450,563 - MPMX20_04268 0.74 -1.7 4,450,621 + MPMX20_04268 0.79 +2.1 4,450,823 + +0.8 4,450,823 + +0.5 4,450,831 - -3.7 4,450,852 - +1.3 4,450,887 - -0.3 4,450,889 + -0.1 4,450,889 + +3.1 4,450,891 + -0.5 4,450,891 + +2.5 4,450,897 - +2.9 4,450,899 - -1.2 4,450,935 - +0.5 4,451,182 - -1.3 4,451,191 + -1.2 4,451,217 + +0.7 4,451,229 - -0.3 4,451,229 - -1.0 4,451,236 + +3.4 4,451,241 + -2.5 4,451,268 + +0.7 4,451,268 + -2.8 4,451,269 - -0.1 4,451,276 - -2.6 4,451,276 - -1.9 4,451,276 - -3.3 4,451,276 - -0.9 4,451,276 - +0.3 4,451,470 + MPMX20_04269 0.13 +2.9 4,451,477 + MPMX20_04269 0.13 -0.5 4,451,478 - MPMX20_04269 0.13 +0.5 4,451,654 - MPMX20_04269 0.20 +0.7 4,451,699 + MPMX20_04269 0.22 -1.2 4,451,702 + MPMX20_04269 0.22 -0.3 4,451,751 + MPMX20_04269 0.24 -0.8 4,451,759 - MPMX20_04269 0.24 -1.1 4,451,862 + MPMX20_04269 0.28 -1.2 4,451,866 + MPMX20_04269 0.28 +1.0 4,451,909 - MPMX20_04269 0.30 +1.7 4,452,044 + MPMX20_04269 0.35 +0.3 4,452,088 + MPMX20_04269 0.37 +3.4 4,452,115 - MPMX20_04269 0.38 +1.0 4,452,121 + MPMX20_04269 0.38 +3.2 4,452,129 - MPMX20_04269 0.39 +0.2 4,452,129 - MPMX20_04269 0.39 +0.9 4,452,160 + MPMX20_04269 0.40 +0.7 4,452,173 + MPMX20_04269 0.41 -0.1 4,452,214 - MPMX20_04269 0.42 -0.5 4,452,235 + MPMX20_04269 0.43 -0.3 4,452,235 + MPMX20_04269 0.43 +0.9 4,452,235 + MPMX20_04269 0.43 +0.4 4,452,257 + MPMX20_04269 0.44 -0.6 4,452,263 - MPMX20_04269 0.44 -3.1 4,452,263 - MPMX20_04269 0.44 +0.6 4,452,371 + MPMX20_04269 0.48 -1.8 4,452,385 + MPMX20_04269 0.49 -0.7 4,452,431 + MPMX20_04269 0.51 +1.5 4,452,431 + MPMX20_04269 0.51 +0.8 4,452,526 - MPMX20_04269 0.54 +2.9 4,452,561 - MPMX20_04269 0.56 +0.3 4,452,584 + MPMX20_04269 0.57 -0.4 4,452,586 + MPMX20_04269 0.57 -2.1 4,452,613 + MPMX20_04269 0.58 -1.1 4,452,633 + MPMX20_04269 0.59 -0.7 4,452,693 + MPMX20_04269 0.61 +2.7 4,452,700 + MPMX20_04269 0.61 +0.2 4,452,700 + MPMX20_04269 0.61 +3.0 4,452,759 - MPMX20_04269 0.64 +0.4 4,452,781 - MPMX20_04269 0.64 +1.5 4,452,805 - MPMX20_04269 0.65 +8.1 4,452,910 + MPMX20_04269 0.69 -2.1 4,452,940 - MPMX20_04269 0.71 +0.7 4,452,945 - MPMX20_04269 0.71 +0.7 4,453,141 - MPMX20_04269 0.79 +1.3 4,453,144 + MPMX20_04269 0.79 -1.2 4,453,148 - MPMX20_04269 0.79 -0.8 4,453,208 + MPMX20_04269 0.81 -1.1 4,453,208 + MPMX20_04269 0.81 -0.8 4,453,208 + MPMX20_04269 0.81 -2.3 4,453,216 - MPMX20_04269 0.82 +2.2 4,453,218 - MPMX20_04269 0.82 +2.9 4,453,242 + MPMX20_04269 0.83 -1.3 4,453,242 + MPMX20_04269 0.83 -1.5 4,453,288 + MPMX20_04269 0.84 +1.9 4,453,288 + MPMX20_04269 0.84 -0.4 4,453,296 - MPMX20_04269 0.85 -0.3 4,453,308 + MPMX20_04269 0.85 -0.6 4,453,338 + MPMX20_04269 0.86 -1.8 4,453,353 - MPMX20_04269 0.87 -0.7 4,453,392 - MPMX20_04269 0.88 +2.9 4,453,394 + MPMX20_04269 0.89 -1.2 4,453,409 + MPMX20_04269 0.89 +1.2 4,453,633 - +1.2 4,453,692 + +0.6 4,453,728 + MPMX20_04270 0.14 +0.7 4,453,740 + MPMX20_04270 0.18 +0.7 4,453,747 + MPMX20_04270 0.20 +0.9 4,453,795 + MPMX20_04270 0.35 -0.6 4,453,815 - MPMX20_04270 0.41 +0.3 4,453,862 + MPMX20_04270 0.55 -1.3 4,453,870 + MPMX20_04270 0.57 -0.3 4,453,927 + MPMX20_04270 0.75 -0.1 4,453,953 - MPMX20_04270 0.83 -1.1 4,453,960 + MPMX20_04270 0.85 +0.0 4,453,960 + MPMX20_04270 0.85 -1.1 4,453,968 - MPMX20_04270 0.87 -0.6 4,453,999 - +0.7 4,454,003 + +0.2 4,454,003 + +0.0 4,454,004 - +0.5 4,454,033 + -1.8 4,454,041 - +0.5 4,454,078 + -0.1 4,454,268 + -1.6 4,454,276 - -2.2 4,454,324 + MPMX20_04271 0.13 -1.8 4,454,335 + MPMX20_04271 0.14 -1.6 4,454,498 - MPMX20_04271 0.26 -1.2 4,454,622 - MPMX20_04271 0.35 -0.3 4,454,648 - MPMX20_04271 0.37 +0.0
Or see this region's nucleotide sequence