Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03879

Experiment: TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03877 and MPMX20_03878 are separated by 28 nucleotidesMPMX20_03878 and MPMX20_03879 overlap by 1 nucleotidesMPMX20_03879 and MPMX20_03880 are separated by 27 nucleotidesMPMX20_03880 and MPMX20_03881 overlap by 4 nucleotides MPMX20_03877: MPMX20_03877 - DNA topoisomerase 4 subunit B, at 4,086,211 to 4,088,103 _03877 MPMX20_03878: MPMX20_03878 - hypothetical protein, at 4,088,132 to 4,088,713 _03878 MPMX20_03879: MPMX20_03879 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 4,088,713 to 4,089,540 _03879 MPMX20_03880: MPMX20_03880 - hypothetical protein, at 4,089,568 to 4,089,990 _03880 MPMX20_03881: MPMX20_03881 - ADP-ribose pyrophosphatase, at 4,089,987 to 4,090,619 _03881 Position (kb) 4088 4089 4090Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.382 kb on + strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.390 kb on - strand, within MPMX20_03878at 4088.406 kb on + strand, within MPMX20_03878at 4088.442 kb on + strand, within MPMX20_03878at 4088.464 kb on + strand, within MPMX20_03878at 4088.464 kb on + strand, within MPMX20_03878at 4088.472 kb on - strand, within MPMX20_03878at 4088.506 kb on + strand, within MPMX20_03878at 4088.506 kb on + strand, within MPMX20_03878at 4088.506 kb on + strand, within MPMX20_03878at 4088.604 kb on - strand, within MPMX20_03878at 4088.695 kb on + strandat 4088.702 kb on - strandat 4088.711 kb on + strandat 4088.777 kb on - strandat 4088.779 kb on + strandat 4088.799 kb on + strand, within MPMX20_03879at 4088.807 kb on - strand, within MPMX20_03879at 4088.807 kb on - strand, within MPMX20_03879at 4088.835 kb on + strand, within MPMX20_03879at 4088.843 kb on - strand, within MPMX20_03879at 4088.872 kb on + strand, within MPMX20_03879at 4088.975 kb on + strand, within MPMX20_03879at 4088.975 kb on + strand, within MPMX20_03879at 4088.980 kb on + strand, within MPMX20_03879at 4088.980 kb on + strand, within MPMX20_03879at 4088.988 kb on - strand, within MPMX20_03879at 4089.001 kb on - strand, within MPMX20_03879at 4089.015 kb on - strand, within MPMX20_03879at 4089.143 kb on + strand, within MPMX20_03879at 4089.157 kb on + strand, within MPMX20_03879at 4089.211 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.243 kb on - strand, within MPMX20_03879at 4089.243 kb on - strand, within MPMX20_03879at 4089.243 kb on - strand, within MPMX20_03879at 4089.332 kb on + strand, within MPMX20_03879at 4089.345 kb on - strand, within MPMX20_03879at 4089.350 kb on - strand, within MPMX20_03879at 4089.413 kb on - strand, within MPMX20_03879at 4089.506 kb on - strandat 4089.617 kb on - strand, within MPMX20_03880at 4089.633 kb on + strand, within MPMX20_03880at 4089.722 kb on - strand, within MPMX20_03880at 4089.722 kb on - strand, within MPMX20_03880at 4089.724 kb on - strand, within MPMX20_03880at 4089.746 kb on + strand, within MPMX20_03880at 4089.754 kb on - strand, within MPMX20_03880at 4089.783 kb on + strand, within MPMX20_03880at 4089.790 kb on + strand, within MPMX20_03880at 4089.819 kb on + strand, within MPMX20_03880at 4089.819 kb on + strand, within MPMX20_03880at 4089.827 kb on - strand, within MPMX20_03880at 4089.827 kb on - strand, within MPMX20_03880at 4089.827 kb on - strand, within MPMX20_03880at 4089.827 kb on - strand, within MPMX20_03880at 4089.873 kb on + strand, within MPMX20_03880at 4089.873 kb on + strand, within MPMX20_03880at 4089.881 kb on - strand, within MPMX20_03880at 4089.977 kb on + strandat 4089.982 kb on - strandat 4089.982 kb on - strandat 4090.025 kb on + strandat 4090.095 kb on - strand, within MPMX20_03881at 4090.097 kb on + strand, within MPMX20_03881at 4090.105 kb on - strand, within MPMX20_03881at 4090.105 kb on - strand, within MPMX20_03881at 4090.105 kb on - strand, within MPMX20_03881at 4090.197 kb on - strand, within MPMX20_03881at 4090.259 kb on + strand, within MPMX20_03881at 4090.319 kb on + strand, within MPMX20_03881at 4090.381 kb on + strand, within MPMX20_03881at 4090.429 kb on - strand, within MPMX20_03881at 4090.429 kb on - strand, within MPMX20_03881at 4090.430 kb on + strand, within MPMX20_03881at 4090.502 kb on + strand, within MPMX20_03881

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Rhodococcus_aetherivorans_MH2
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4,088,382 + MPMX20_03878 0.43 +0.9
4,088,382 + MPMX20_03878 0.43 -0.4
4,088,382 + MPMX20_03878 0.43 +1.6
4,088,382 + MPMX20_03878 0.43 -0.2
4,088,382 + MPMX20_03878 0.43 -2.3
4,088,382 + MPMX20_03878 0.43 +1.3
4,088,382 + MPMX20_03878 0.43 +0.3
4,088,382 + MPMX20_03878 0.43 -0.3
4,088,382 + MPMX20_03878 0.43 +0.1
4,088,382 + MPMX20_03878 0.43 -0.8
4,088,382 + MPMX20_03878 0.43 +0.3
4,088,382 + MPMX20_03878 0.43 +0.0
4,088,390 - MPMX20_03878 0.44 -2.1
4,088,390 - MPMX20_03878 0.44 -3.0
4,088,390 - MPMX20_03878 0.44 +0.3
4,088,390 - MPMX20_03878 0.44 +0.3
4,088,390 - MPMX20_03878 0.44 +2.9
4,088,390 - MPMX20_03878 0.44 +0.1
4,088,390 - MPMX20_03878 0.44 -0.9
4,088,390 - MPMX20_03878 0.44 -2.6
4,088,390 - MPMX20_03878 0.44 -2.4
4,088,390 - MPMX20_03878 0.44 +0.3
4,088,390 - MPMX20_03878 0.44 +0.5
4,088,390 - MPMX20_03878 0.44 -1.2
4,088,406 + MPMX20_03878 0.47 +2.9
4,088,442 + MPMX20_03878 0.53 +2.7
4,088,464 + MPMX20_03878 0.57 -0.9
4,088,464 + MPMX20_03878 0.57 +1.9
4,088,472 - MPMX20_03878 0.58 -0.2
4,088,506 + MPMX20_03878 0.64 +0.2
4,088,506 + MPMX20_03878 0.64 -1.0
4,088,506 + MPMX20_03878 0.64 +2.9
4,088,604 - MPMX20_03878 0.81 -2.3
4,088,695 + -0.5
4,088,702 - -2.1
4,088,711 + -1.3
4,088,777 - -0.8
4,088,779 + -0.3
4,088,799 + MPMX20_03879 0.10 +0.3
4,088,807 - MPMX20_03879 0.11 +0.8
4,088,807 - MPMX20_03879 0.11 +3.4
4,088,835 + MPMX20_03879 0.15 -0.7
4,088,843 - MPMX20_03879 0.16 +0.1
4,088,872 + MPMX20_03879 0.19 -0.1
4,088,975 + MPMX20_03879 0.32 -0.6
4,088,975 + MPMX20_03879 0.32 +3.6
4,088,980 + MPMX20_03879 0.32 -0.1
4,088,980 + MPMX20_03879 0.32 +0.3
4,088,988 - MPMX20_03879 0.33 +3.2
4,089,001 - MPMX20_03879 0.35 +1.3
4,089,015 - MPMX20_03879 0.36 +0.1
4,089,143 + MPMX20_03879 0.52 -0.7
4,089,157 + MPMX20_03879 0.54 -0.3
4,089,211 + MPMX20_03879 0.60 +1.3
4,089,235 + MPMX20_03879 0.63 +3.9
4,089,235 + MPMX20_03879 0.63 +2.1
4,089,235 + MPMX20_03879 0.63 +0.1
4,089,235 + MPMX20_03879 0.63 -0.1
4,089,235 + MPMX20_03879 0.63 +0.6
4,089,243 - MPMX20_03879 0.64 -1.5
4,089,243 - MPMX20_03879 0.64 +0.5
4,089,243 - MPMX20_03879 0.64 -1.2
4,089,332 + MPMX20_03879 0.75 -1.6
4,089,345 - MPMX20_03879 0.76 -2.2
4,089,350 - MPMX20_03879 0.77 +1.0
4,089,413 - MPMX20_03879 0.85 -0.1
4,089,506 - -0.7
4,089,617 - MPMX20_03880 0.12 +0.3
4,089,633 + MPMX20_03880 0.15 +0.7
4,089,722 - MPMX20_03880 0.36 -1.6
4,089,722 - MPMX20_03880 0.36 +0.6
4,089,724 - MPMX20_03880 0.37 -0.5
4,089,746 + MPMX20_03880 0.42 -2.1
4,089,754 - MPMX20_03880 0.44 +1.7
4,089,783 + MPMX20_03880 0.51 +0.6
4,089,790 + MPMX20_03880 0.52 +2.7
4,089,819 + MPMX20_03880 0.59 +0.1
4,089,819 + MPMX20_03880 0.59 -1.9
4,089,827 - MPMX20_03880 0.61 +0.2
4,089,827 - MPMX20_03880 0.61 +1.6
4,089,827 - MPMX20_03880 0.61 -0.5
4,089,827 - MPMX20_03880 0.61 +0.9
4,089,873 + MPMX20_03880 0.72 -0.9
4,089,873 + MPMX20_03880 0.72 +0.1
4,089,881 - MPMX20_03880 0.74 +2.9
4,089,977 + +0.3
4,089,982 - -0.4
4,089,982 - +0.3
4,090,025 + +1.2
4,090,095 - MPMX20_03881 0.17 -1.2
4,090,097 + MPMX20_03881 0.17 -1.4
4,090,105 - MPMX20_03881 0.19 -1.3
4,090,105 - MPMX20_03881 0.19 -1.3
4,090,105 - MPMX20_03881 0.19 +1.2
4,090,197 - MPMX20_03881 0.33 +0.9
4,090,259 + MPMX20_03881 0.43 -1.9
4,090,319 + MPMX20_03881 0.52 +2.4
4,090,381 + MPMX20_03881 0.62 +0.9
4,090,429 - MPMX20_03881 0.70 +0.6
4,090,429 - MPMX20_03881 0.70 -1.2
4,090,430 + MPMX20_03881 0.70 +0.3
4,090,502 + MPMX20_03881 0.81 -2.0

Or see this region's nucleotide sequence