Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13215

Experiment: Time0_washed

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_washed
2,960,476	+		LRK54_RS13210	0.30	+1.6
2,960,476	+		LRK54_RS13210	0.30	+0.4
2,960,476	+		LRK54_RS13210	0.30	-0.3
2,960,477	-		LRK54_RS13210	0.30	+0.7
2,960,477	-		LRK54_RS13210	0.30	+0.0
2,960,477	-		LRK54_RS13210	0.30	-0.8
2,960,477	-		LRK54_RS13210	0.30	-1.5
2,960,477	-		LRK54_RS13210	0.30	+0.9
2,960,477	-		LRK54_RS13210	0.30	-0.5
2,960,477	-		LRK54_RS13210	0.30	-0.7
2,960,710	+		LRK54_RS13210	0.49	-2.1
2,960,710	+		LRK54_RS13210	0.49	+1.0
2,960,771	+		LRK54_RS13210	0.54	-0.2
2,960,772	-		LRK54_RS13210	0.54	-1.2
2,960,772	-		LRK54_RS13210	0.54	+0.6
2,960,772	-		LRK54_RS13210	0.54	+0.6
2,960,772	-		LRK54_RS13210	0.54	-0.4
2,960,772	-		LRK54_RS13210	0.54	-0.0
2,960,794	+		LRK54_RS13210	0.56	-0.6
2,960,794	+		LRK54_RS13210	0.56	-0.0
2,960,795	-		LRK54_RS13210	0.56	-0.4
2,960,861	+		LRK54_RS13210	0.62	+0.3
2,960,862	-		LRK54_RS13210	0.62	-0.4
2,960,914	+		LRK54_RS13210	0.66	+0.3
2,960,914	+		LRK54_RS13210	0.66	-0.0
2,960,914	+		LRK54_RS13210	0.66	+0.6
2,960,914	+		LRK54_RS13210	0.66	-0.8
2,960,914	+		LRK54_RS13210	0.66	+0.3
2,960,914	+		LRK54_RS13210	0.66	+0.2
2,960,914	+		LRK54_RS13210	0.66	-0.9
2,960,914	+		LRK54_RS13210	0.66	+0.2
2,960,914	+		LRK54_RS13210	0.66	-0.2
2,960,914	+		LRK54_RS13210	0.66	-0.2
2,960,914	+		LRK54_RS13210	0.66	-0.1
2,960,914	+		LRK54_RS13210	0.66	-0.3
2,960,915	-		LRK54_RS13210	0.66	+1.1
2,960,915	-		LRK54_RS13210	0.66	+0.2
2,960,915	-		LRK54_RS13210	0.66	+0.3
2,960,915	-		LRK54_RS13210	0.66	-0.0
2,960,915	-		LRK54_RS13210	0.66	+1.0
2,960,915	-		LRK54_RS13210	0.66	+0.8
2,960,915	-		LRK54_RS13210	0.66	-0.4
2,960,915	-		LRK54_RS13210	0.66	-0.1
2,960,915	-		LRK54_RS13210	0.66	-0.8
2,960,915	-		LRK54_RS13210	0.66	-0.2
2,960,915	-		LRK54_RS13210	0.66	+0.9
2,960,915	-		LRK54_RS13210	0.66	-2.2
2,960,927	+		LRK54_RS13210	0.67	+0.8
2,960,927	+		LRK54_RS13210	0.67	-0.1
2,960,927	+		LRK54_RS13210	0.67	+1.6
2,960,927	+		LRK54_RS13210	0.67	-0.6
2,960,927	+		LRK54_RS13210	0.67	-0.2
2,960,928	-		LRK54_RS13210	0.67	+0.6
2,960,928	-		LRK54_RS13210	0.67	-0.1
2,960,928	-		LRK54_RS13210	0.67	-1.0
2,961,054	-		LRK54_RS13210	0.78	-0.1
2,961,067	+		LRK54_RS13210	0.79	-0.3
2,961,067	+		LRK54_RS13210	0.79	+0.2
2,961,067	+		LRK54_RS13210	0.79	-0.7
2,961,067	+		LRK54_RS13210	0.79	+0.3
2,961,067	+		LRK54_RS13210	0.79	-1.0
2,961,068	-		LRK54_RS13210	0.79	+0.3
2,961,068	-		LRK54_RS13210	0.79	-0.8
2,961,068	-		LRK54_RS13210	0.79	+1.0
2,961,068	-		LRK54_RS13210	0.79	-1.1
2,961,068	-		LRK54_RS13210	0.79	-0.8
2,961,068	-		LRK54_RS13210	0.79	-0.0
2,961,068	-		LRK54_RS13210	0.79	-0.0
2,961,068	-		LRK54_RS13210	0.79	+0.4
2,961,074	-		LRK54_RS13210	0.79	-0.3
2,961,074	-		LRK54_RS13210	0.79	+2.6
2,961,074	-		LRK54_RS13210	0.79	-0.8
2,961,074	-		LRK54_RS13210	0.79	-0.2
2,961,187	-		LRK54_RS13210	0.88	-0.2
2,961,187	-		LRK54_RS13210	0.88	-1.1
2,961,187	-		LRK54_RS13210	0.88	+0.2
2,961,187	-		LRK54_RS13210	0.88	+1.3
2,961,212	+				-0.1
2,961,212	+				-0.2
2,961,212	+				+0.8
2,961,212	+				-0.4
2,961,212	+				+0.4
2,961,213	-				-0.4
2,961,213	-				-0.1
2,961,213	-				-0.3
2,961,213	-				-0.7
2,961,213	-				-0.0
2,961,213	-				-0.9
2,961,214	+				-1.8
2,961,214	+				-0.1
2,961,214	+				+0.9
2,961,214	+				+1.4
2,961,214	+				-0.8
2,961,215	-				+1.8
2,961,215	-				+1.9
2,961,215	-				-1.8
2,961,215	-				-0.1
2,961,268	+				-0.4
2,961,268	+				+0.6
2,961,269	-				-0.5
2,961,373	+				-1.2
2,961,373	+				-0.0
2,961,373	+				-0.3
2,961,373	+				-0.6
2,961,373	+				+1.6
2,961,373	+				+1.3
2,961,373	+				-0.4
2,961,373	+				-2.2
2,961,373	+				-0.6
2,961,373	+				+1.9
2,961,373	+				+3.6
2,961,374	-				-0.8
2,961,374	-				-0.0
2,961,374	-				-0.1
2,961,374	-				-0.0
2,961,374	-				-0.6
2,961,374	-				-0.2
2,961,374	-				-0.2
2,961,374	-				-0.8
2,961,374	-				+0.7
2,961,374	-				-0.8
2,961,461	+				+0.6
2,961,461	+				+0.8
2,961,461	+				-0.6
2,961,461	+				-0.4
2,961,461	+				+0.3
2,961,461	+				-1.3
2,961,461	+				+0.2
2,961,462	-				-0.2
2,961,511	+		LRK54_RS13215	0.11	-0.3
2,961,512	-		LRK54_RS13215	0.12	-1.2
2,961,714	-		LRK54_RS13215	0.43	+0.6
2,961,801	+		LRK54_RS13215	0.56	+0.3
2,961,801	+		LRK54_RS13215	0.56	-0.9
2,961,801	+		LRK54_RS13215	0.56	-1.0
2,961,802	-		LRK54_RS13215	0.57	-1.8
2,961,802	-		LRK54_RS13215	0.57	+1.2
2,961,802	-		LRK54_RS13215	0.57	-1.4
2,961,873	+		LRK54_RS13215	0.68	+0.3
2,961,873	+		LRK54_RS13215	0.68	+0.6
2,961,873	+		LRK54_RS13215	0.68	-0.8
2,961,874	-		LRK54_RS13215	0.68	+0.2
2,961,874	-		LRK54_RS13215	0.68	-0.4
2,961,874	-		LRK54_RS13215	0.68	+0.6
2,961,967	-		LRK54_RS13215	0.82	+0.6
2,962,032	+				-0.0
2,962,033	-				+0.6
2,962,058	+				-1.3
2,962,059	-				+1.6
2,962,059	-				-0.0
2,962,059	-				-0.3
2,962,059	-				-0.7
2,962,060	+				-0.4
2,962,120	-				-0.2
2,962,132	+				-1.0
2,962,133	-				-1.3
2,962,281	+				-1.2
2,962,292	+				-1.0
2,962,292	+				-0.8
2,962,292	+				-0.2
2,962,292	+				+0.2
2,962,293	-				-0.0
2,962,293	-				+0.2
2,962,293	-				-0.7
2,962,293	-				-0.3
2,962,293	-				+2.2
2,962,464	-				-0.9
2,962,464	-				+0.2
2,962,538	+				+1.0
2,962,539	-				-0.5
2,962,539	-				-0.0
2,962,539	-				-0.6
2,962,539	-				+2.2
2,962,539	-				-0.3
2,962,759	+		LRK54_RS13220	0.17	+0.3
2,962,759	+		LRK54_RS13220	0.17	-0.6
2,962,759	+		LRK54_RS13220	0.17	+0.9
2,962,759	+		LRK54_RS13220	0.17	+1.4
2,962,759	+		LRK54_RS13220	0.17	+0.7
2,962,759	+		LRK54_RS13220	0.17	+0.1
2,962,759	+		LRK54_RS13220	0.17	-0.3
2,962,759	+		LRK54_RS13220	0.17	+0.0
2,962,759	+		LRK54_RS13220	0.17	+1.0
2,962,759	+		LRK54_RS13220	0.17	-0.3
2,962,759	+		LRK54_RS13220	0.17	+0.3
2,962,759	+		LRK54_RS13220	0.17	-1.7
2,962,760	-		LRK54_RS13220	0.17	-0.4
2,962,760	-		LRK54_RS13220	0.17	-1.1
2,962,760	-		LRK54_RS13220	0.17	-0.5
2,962,760	-		LRK54_RS13220	0.17	-0.4
2,962,760	-		LRK54_RS13220	0.17	-0.1
2,962,793	+		LRK54_RS13220	0.19	+0.3
2,962,793	+		LRK54_RS13220	0.19	+0.5
2,962,794	-		LRK54_RS13220	0.19	+1.0
2,962,794	-		LRK54_RS13220	0.19	-0.9
2,962,908	+		LRK54_RS13220	0.27	+0.2
2,962,908	+		LRK54_RS13220	0.27	-0.2
2,962,908	+		LRK54_RS13220	0.27	+1.6
2,962,909	-		LRK54_RS13220	0.27	+1.2
2,962,933	+		LRK54_RS13220	0.29	-3.1
2,962,933	+		LRK54_RS13220	0.29	-0.5
2,962,934	-		LRK54_RS13220	0.29	+1.6
2,962,934	-		LRK54_RS13220	0.29	+1.0
2,962,948	+		LRK54_RS13220	0.30	+0.5
2,962,948	+		LRK54_RS13220	0.30	-1.0
2,962,949	-		LRK54_RS13220	0.30	+0.7
2,962,949	-		LRK54_RS13220	0.30	-0.4
2,962,949	-		LRK54_RS13220	0.30	+1.6
2,962,949	-		LRK54_RS13220	0.30	+0.3
2,962,949	-		LRK54_RS13220	0.30	+0.2
2,962,949	-		LRK54_RS13220	0.30	-0.3
2,962,949	-		LRK54_RS13220	0.30	-0.6
2,962,949	-		LRK54_RS13220	0.30	+0.6
2,962,949	-		LRK54_RS13220	0.30	-0.4
2,962,949	-		LRK54_RS13220	0.30	+0.4
2,963,024	-		LRK54_RS13220	0.36	-0.0