Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15105

Experiment: NLDM_defined low iron; midlog

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_defined low iron; midlog
3,335,134	+		LRK54_RS15090	0.88	+0.9
3,335,134	+		LRK54_RS15090	0.88	+0.3
3,335,134	+		LRK54_RS15090	0.88	+0.6
3,335,134	+		LRK54_RS15090	0.88	-1.8
3,335,135	-		LRK54_RS15090	0.88	-0.6
3,335,135	-		LRK54_RS15090	0.88	-0.9
3,335,430	+		LRK54_RS15095	0.48	+0.4
3,335,430	+		LRK54_RS15095	0.48	-1.5
3,335,430	+		LRK54_RS15095	0.48	-0.1
3,335,430	+		LRK54_RS15095	0.48	+0.4
3,335,430	+		LRK54_RS15095	0.48	+0.2
3,335,430	+		LRK54_RS15095	0.48	-0.6
3,335,430	+		LRK54_RS15095	0.48	+2.4
3,335,431	-		LRK54_RS15095	0.49	+2.4
3,335,431	-		LRK54_RS15095	0.49	-0.2
3,335,462	+		LRK54_RS15095	0.58	-1.4
3,335,462	+		LRK54_RS15095	0.58	+2.4
3,335,462	+		LRK54_RS15095	0.58	+0.4
3,335,462	+		LRK54_RS15095	0.58	+0.4
3,335,462	+		LRK54_RS15095	0.58	-2.1
3,335,463	-		LRK54_RS15095	0.59	-0.4
3,335,463	-		LRK54_RS15095	0.59	+0.2
3,335,463	-		LRK54_RS15095	0.59	-1.0
3,335,463	-		LRK54_RS15095	0.59	-0.7
3,335,463	-		LRK54_RS15095	0.59	-1.1
3,335,463	-		LRK54_RS15095	0.59	+1.8
3,335,463	-		LRK54_RS15095	0.59	+0.4
3,335,463	-		LRK54_RS15095	0.59	+0.9
3,335,463	-		LRK54_RS15095	0.59	-0.4
3,335,463	-		LRK54_RS15095	0.59	+1.2
3,335,556	+		LRK54_RS15095	0.87	+0.4
3,335,556	+		LRK54_RS15095	0.87	+0.2
3,335,556	+		LRK54_RS15095	0.87	+0.2
3,335,556	+		LRK54_RS15095	0.87	-0.1
3,335,556	+		LRK54_RS15095	0.87	-0.7
3,335,556	+		LRK54_RS15095	0.87	-1.6
3,335,556	+		LRK54_RS15095	0.87	+0.4
3,335,556	+		LRK54_RS15095	0.87	-0.4
3,335,556	+		LRK54_RS15095	0.87	-0.9
3,335,556	+		LRK54_RS15095	0.87	+1.0
3,335,556	+		LRK54_RS15095	0.87	+2.4
3,335,556	+		LRK54_RS15095	0.87	+1.4
3,335,556	+		LRK54_RS15095	0.87	+1.4
3,335,556	+		LRK54_RS15095	0.87	-3.1
3,335,557	-		LRK54_RS15095	0.88	-0.4
3,335,557	-		LRK54_RS15095	0.88	+0.2
3,335,557	-		LRK54_RS15095	0.88	-0.1
3,335,557	-		LRK54_RS15095	0.88	+0.4
3,335,557	-		LRK54_RS15095	0.88	+0.6
3,335,557	-		LRK54_RS15095	0.88	+1.7
3,335,557	-		LRK54_RS15095	0.88	-0.6
3,335,557	-		LRK54_RS15095	0.88	-1.8
3,335,557	-		LRK54_RS15095	0.88	+1.8
3,335,557	-		LRK54_RS15095	0.88	+0.2
3,335,557	-		LRK54_RS15095	0.88	-1.1
3,335,557	-		LRK54_RS15095	0.88	+2.0
3,335,557	-		LRK54_RS15095	0.88	-0.3
3,335,557	-		LRK54_RS15095	0.88	+1.4
3,335,557	-		LRK54_RS15095	0.88	-1.1
3,335,667	+				-1.2
3,335,667	+				+0.9
3,335,667	+				+0.7
3,335,667	+				-0.5
3,335,667	+				+0.5
3,335,667	+				-0.1
3,335,667	+				-0.4
3,335,667	+				-0.6
3,335,668	-				-0.6
3,335,668	-				-1.1
3,335,668	-				-0.2
3,335,668	-				-0.3
3,335,668	-				-0.8
3,335,668	-				+0.3
3,335,668	-				+0.8
3,335,668	-				-0.6
3,335,668	-				+1.3
3,335,668	-				+0.4
3,335,668	-				-0.2
3,335,668	-				-0.4
3,335,672	+				-0.0
3,335,672	+				-0.7
3,335,673	-				-1.4
3,335,799	+				+0.0
3,335,799	+				-2.0
3,335,799	+				+0.2
3,335,799	+				-2.1
3,335,799	+				+0.4
3,335,799	+				-1.6
3,335,799	+				-0.6
3,335,799	+				+2.0
3,335,799	+				-0.3
3,335,799	+				+0.7
3,335,799	+				-0.1
3,335,799	+				-0.4
3,335,799	+				-1.1
3,335,799	+				+0.8
3,335,799	+				-0.2
3,335,799	+				+0.4
3,335,799	+				+0.5
3,335,799	+				+3.0
3,335,799	+				-0.0
3,335,799	+				+1.1
3,335,799	+				+1.4
3,335,799	+				-0.9
3,335,799	+				-1.1
3,335,799	+				+1.7
3,335,799	+				+1.6
3,335,799	+				-0.6
3,335,799	+				+0.0
3,335,799	+				+2.0
3,335,799	+				-0.3
3,335,799	+				-0.6
3,335,799	+				-1.0
3,335,800	-				-0.9
3,335,800	-				-0.3
3,335,800	-				+0.7
3,335,800	-				-0.1
3,335,800	-				+1.4
3,335,800	-				-1.4
3,335,800	-				+0.9
3,335,800	-				-0.4
3,335,800	-				+0.6
3,335,800	-				+0.5
3,335,800	-				+0.5
3,335,800	-				-0.7
3,335,800	-				-1.6
3,335,800	-				+0.1
3,335,800	-				-0.7
3,335,800	-				-0.8
3,335,800	-				-1.1
3,335,800	-				+1.0
3,335,800	-				-0.9
3,335,800	-				+0.4
3,335,864	-		LRK54_RS15100	0.14	+1.4
3,335,915	+		LRK54_RS15100	0.82	-0.1
3,335,916	-		LRK54_RS15100	0.83	+0.9
3,335,932	-				+1.4
3,335,932	-				-0.5
3,335,932	-				-1.4
3,335,932	-				+0.7
3,335,949	-				-0.6
3,335,949	-				-0.5
3,335,949	-				-3.3
3,335,949	-				+0.9
3,335,949	-				-0.1
3,335,949	-				-1.4
3,335,951	+				-0.0
3,335,951	+				+0.4
3,335,951	+				+1.0
3,335,952	-				+0.4
3,335,952	-				-0.1
3,335,952	-				+0.1
3,335,952	-				+0.3
3,335,952	-				+1.3
3,335,952	-				-1.4
3,335,952	-				+0.4
3,335,952	-				+0.4
3,335,952	-				-1.9
3,335,953	+				-1.2
3,335,953	+				+0.2
3,335,953	+				-0.1
3,335,954	-				-0.1
3,335,954	-				+1.1
3,335,954	-				-1.7
3,335,954	-				-0.9
3,336,074	+				-0.0
3,336,074	+				-0.1
3,336,074	+				-2.1
3,336,074	+				-2.1
3,336,074	+				-0.6
3,336,074	+				-1.4
3,336,074	+				+0.6
3,336,074	+				+2.4
3,336,074	+				+1.2
3,336,075	-				+0.1
3,336,075	-				-1.4
3,336,075	-				-0.0
3,336,075	-				-0.0
3,336,075	-				-0.0
3,336,075	-				+0.5
3,336,075	-				-0.2
3,336,075	-				-1.4
3,336,075	-				-0.7
3,336,075	-				+0.4
3,336,075	-				-0.6
3,336,075	-				-0.3
3,336,075	-				-1.3
3,336,075	-				+1.0
3,336,075	-				-0.5
3,336,075	-				-0.7
3,336,075	-				-0.0
3,336,075	-				-0.3
3,336,076	+				+0.7
3,336,076	+				-1.1
3,336,076	+				-0.3
3,336,076	+				+3.4
3,336,076	+				+1.4
3,336,076	+				-0.4
3,336,076	+				+3.0
3,336,076	+				-1.7
3,336,076	+				-0.4
3,336,076	+				+0.2
3,336,076	+				+0.9
3,336,076	+				+1.1
3,336,076	+				-1.7
3,336,076	+				-1.7
3,336,076	+				+0.7
3,336,076	+				-0.7
3,336,076	+				+0.2
3,336,076	+				-1.0
3,336,076	+				+1.4
3,336,076	+				-0.4
3,336,076	+				-0.8
3,336,076	+				+2.3
3,336,076	+				-0.3
3,336,076	+				-1.0
3,336,076	+				+1.4
3,336,076	+				-0.8
3,336,076	+				+0.1
3,336,076	+				-3.3
3,336,076	+				-1.5
3,336,076	+				+1.4
3,336,076	+				+0.6
3,336,076	+				+1.0
3,336,076	+				+0.1
3,336,076	+				-0.3
3,336,076	+				-0.9
3,336,076	+				-1.6
3,336,076	+				-0.0
3,336,076	+				-0.3
3,336,076	+				-0.3
3,336,076	+				+0.7
3,336,076	+				-1.9
3,336,076	+				-0.6
3,336,076	+				+0.4
3,336,076	+				-1.2
3,336,076	+				-0.6
3,336,076	+				-0.1
3,336,076	+				-0.1
3,336,076	+				+0.2
3,336,076	+				+0.5
3,336,076	+				+0.1
3,336,076	+				+2.8
3,336,077	-				-0.1
3,336,077	-				-1.6
3,336,077	-				+0.4
3,336,077	-				-0.1
3,336,077	-				+0.4
3,336,077	-				-0.9
3,336,077	-				+0.4
3,336,077	-				-1.4
3,336,077	-				+3.8
3,336,077	-				-0.1
3,336,077	-				-0.1
3,336,077	-				-0.6
3,336,077	-				+0.2
3,336,228	+				+1.4
3,336,228	+				+0.2
3,336,258	+		LRK54_RS15105	0.10	-1.4
3,336,258	+		LRK54_RS15105	0.10	+0.4
3,336,258	+		LRK54_RS15105	0.10	+0.4
3,336,538	+		LRK54_RS15105	0.31	-2.9
3,336,539	-		LRK54_RS15105	0.31	+0.4
3,336,567	+		LRK54_RS15105	0.33	-0.3
3,336,567	+		LRK54_RS15105	0.33	-1.7
3,336,567	+		LRK54_RS15105	0.33	-0.6
3,336,567	+		LRK54_RS15105	0.33	-0.3
3,336,567	+		LRK54_RS15105	0.33	-0.4
3,336,567	+		LRK54_RS15105	0.33	+0.4
3,336,567	+		LRK54_RS15105	0.33	-0.6
3,336,567	+		LRK54_RS15105	0.33	-0.6
3,336,567	+		LRK54_RS15105	0.33	+0.7
3,336,567	+		LRK54_RS15105	0.33	+0.9
3,336,567	+		LRK54_RS15105	0.33	+0.1
3,336,567	+		LRK54_RS15105	0.33	+1.4
3,336,567	+		LRK54_RS15105	0.33	-0.4
3,336,567	+		LRK54_RS15105	0.33	+0.1
3,336,567	+		LRK54_RS15105	0.33	-1.1
3,336,567	+		LRK54_RS15105	0.33	-1.4
3,336,567	+		LRK54_RS15105	0.33	-1.0
3,336,567	+		LRK54_RS15105	0.33	-1.6
3,336,567	+		LRK54_RS15105	0.33	+0.4
3,336,567	+		LRK54_RS15105	0.33	+2.8
3,336,567	+		LRK54_RS15105	0.33	-0.4
3,336,567	+		LRK54_RS15105	0.33	-0.9
3,336,570	+		LRK54_RS15105	0.33	-1.4
3,336,570	+		LRK54_RS15105	0.33	-0.6
3,336,570	+		LRK54_RS15105	0.33	-0.9
3,336,600	+		LRK54_RS15105	0.35	-0.9
3,336,600	+		LRK54_RS15105	0.35	-0.6
3,336,600	+		LRK54_RS15105	0.35	-1.9
3,336,600	+		LRK54_RS15105	0.35	-0.1
3,336,600	+		LRK54_RS15105	0.35	+0.4
3,336,600	+		LRK54_RS15105	0.35	+0.4
3,336,600	+		LRK54_RS15105	0.35	-2.3
3,336,600	+		LRK54_RS15105	0.35	-1.1
3,336,600	+		LRK54_RS15105	0.35	-2.1
3,336,600	+		LRK54_RS15105	0.35	-1.6
3,336,600	+		LRK54_RS15105	0.35	+0.3
3,336,666	+		LRK54_RS15105	0.40	-0.3
3,337,481	+				-2.0
3,337,971	+				-1.0
3,338,007	+				-0.5