Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04165

Experiment: NLDM_defined low iron; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04155 and LRK54_RS04160 are separated by 96 nucleotidesLRK54_RS04160 and LRK54_RS04165 are separated by 20 nucleotidesLRK54_RS04165 and LRK54_RS04170 overlap by 4 nucleotides LRK54_RS04155: LRK54_RS04155 - hypothetical protein, at 876,403 to 876,792 _RS04155 LRK54_RS04160: LRK54_RS04160 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 876,889 to 877,623 _RS04160 LRK54_RS04165: LRK54_RS04165 - chemotaxis protein CheW, at 877,644 to 878,162 _RS04165 LRK54_RS04170: LRK54_RS04170 - chemotaxis protein CheB, at 878,159 to 879,742 _RS04170 Position (kb) 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.728 kb on + strand, within LRK54_RS04155at 876.729 kb on - strand, within LRK54_RS04155at 876.729 kb on - strand, within LRK54_RS04155at 876.729 kb on - strand, within LRK54_RS04155at 876.729 kb on - strand, within LRK54_RS04155at 876.729 kb on - strand, within LRK54_RS04155at 876.730 kb on - strand, within LRK54_RS04155at 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.771 kb on + strandat 876.772 kb on - strandat 876.772 kb on - strandat 876.772 kb on - strandat 876.772 kb on - strandat 876.772 kb on - strandat 876.772 kb on - strandat 876.854 kb on + strandat 876.855 kb on - strandat 876.855 kb on - strandat 876.855 kb on - strandat 876.855 kb on - strandat 876.903 kb on + strandat 876.931 kb on + strandat 876.931 kb on + strandat 876.931 kb on + strandat 877.036 kb on + strand, within LRK54_RS04160at 877.036 kb on + strand, within LRK54_RS04160at 877.036 kb on + strand, within LRK54_RS04160at 877.036 kb on + strand, within LRK54_RS04160at 877.037 kb on - strand, within LRK54_RS04160at 877.037 kb on - strand, within LRK54_RS04160at 877.037 kb on - strand, within LRK54_RS04160at 877.037 kb on - strand, within LRK54_RS04160at 877.037 kb on - strand, within LRK54_RS04160at 877.037 kb on - strand, within LRK54_RS04160at 877.037 kb on - strand, within LRK54_RS04160at 877.037 kb on - strand, within LRK54_RS04160at 877.621 kb on + strandat 877.621 kb on + strandat 877.621 kb on + strandat 877.621 kb on + strandat 877.621 kb on + strandat 877.767 kb on + strand, within LRK54_RS04165at 877.767 kb on + strand, within LRK54_RS04165at 877.767 kb on + strand, within LRK54_RS04165at 877.768 kb on - strand, within LRK54_RS04165at 878.115 kb on + strandat 878.116 kb on - strandat 878.204 kb on - strandat 878.204 kb on - strandat 878.666 kb on + strand, within LRK54_RS04170at 878.666 kb on + strand, within LRK54_RS04170at 878.666 kb on + strand, within LRK54_RS04170at 878.667 kb on - strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.772 kb on + strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170at 878.773 kb on - strand, within LRK54_RS04170

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low iron; midlog
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876,728 + LRK54_RS04155 0.83 +0.6
876,728 + LRK54_RS04155 0.83 +1.0
876,728 + LRK54_RS04155 0.83 -0.5
876,728 + LRK54_RS04155 0.83 -0.4
876,728 + LRK54_RS04155 0.83 -0.4
876,728 + LRK54_RS04155 0.83 +1.0
876,728 + LRK54_RS04155 0.83 -0.8
876,728 + LRK54_RS04155 0.83 -0.9
876,728 + LRK54_RS04155 0.83 +0.1
876,728 + LRK54_RS04155 0.83 +0.3
876,728 + LRK54_RS04155 0.83 +0.8
876,729 - LRK54_RS04155 0.84 -1.2
876,729 - LRK54_RS04155 0.84 -1.5
876,729 - LRK54_RS04155 0.84 -1.0
876,729 - LRK54_RS04155 0.84 -0.5
876,729 - LRK54_RS04155 0.84 -0.2
876,730 - LRK54_RS04155 0.84 -0.5
876,771 + -0.1
876,771 + -1.8
876,771 + +0.1
876,771 + +0.6
876,771 + +0.5
876,771 + +1.2
876,771 + +0.5
876,771 + +0.8
876,771 + +1.2
876,771 + -0.1
876,771 + -0.0
876,772 - +0.7
876,772 - +0.0
876,772 - +0.0
876,772 - +0.6
876,772 - -0.1
876,772 - +1.4
876,854 + -1.7
876,855 - -1.1
876,855 - -0.7
876,855 - +2.9
876,855 - -0.6
876,903 + +1.6
876,931 + +1.6
876,931 + +1.4
876,931 + -0.2
877,036 + LRK54_RS04160 0.20 -0.3
877,036 + LRK54_RS04160 0.20 +0.0
877,036 + LRK54_RS04160 0.20 -1.2
877,036 + LRK54_RS04160 0.20 -0.6
877,037 - LRK54_RS04160 0.20 +0.4
877,037 - LRK54_RS04160 0.20 +0.4
877,037 - LRK54_RS04160 0.20 +1.9
877,037 - LRK54_RS04160 0.20 -0.1
877,037 - LRK54_RS04160 0.20 -2.7
877,037 - LRK54_RS04160 0.20 +0.9
877,037 - LRK54_RS04160 0.20 -0.6
877,037 - LRK54_RS04160 0.20 +0.7
877,621 + -1.0
877,621 + -0.8
877,621 + -0.4
877,621 + +2.0
877,621 + +0.1
877,767 + LRK54_RS04165 0.24 +0.0
877,767 + LRK54_RS04165 0.24 -1.3
877,767 + LRK54_RS04165 0.24 -1.2
877,768 - LRK54_RS04165 0.24 +0.5
878,115 + +1.0
878,116 - +0.6
878,204 - -1.6
878,204 - -2.1
878,666 + LRK54_RS04170 0.32 -0.1
878,666 + LRK54_RS04170 0.32 +0.3
878,666 + LRK54_RS04170 0.32 -0.4
878,667 - LRK54_RS04170 0.32 +0.5
878,772 + LRK54_RS04170 0.39 +0.2
878,772 + LRK54_RS04170 0.39 -1.4
878,772 + LRK54_RS04170 0.39 +0.2
878,772 + LRK54_RS04170 0.39 -0.3
878,772 + LRK54_RS04170 0.39 +0.8
878,772 + LRK54_RS04170 0.39 -2.5
878,772 + LRK54_RS04170 0.39 -0.4
878,772 + LRK54_RS04170 0.39 -0.2
878,772 + LRK54_RS04170 0.39 -0.0
878,772 + LRK54_RS04170 0.39 -3.1
878,772 + LRK54_RS04170 0.39 -1.0
878,772 + LRK54_RS04170 0.39 -0.9
878,772 + LRK54_RS04170 0.39 +0.6
878,772 + LRK54_RS04170 0.39 -1.0
878,772 + LRK54_RS04170 0.39 +0.0
878,772 + LRK54_RS04170 0.39 -0.9
878,772 + LRK54_RS04170 0.39 +0.9
878,772 + LRK54_RS04170 0.39 -0.4
878,772 + LRK54_RS04170 0.39 +1.0
878,772 + LRK54_RS04170 0.39 -1.0
878,772 + LRK54_RS04170 0.39 +0.3
878,772 + LRK54_RS04170 0.39 +0.0
878,772 + LRK54_RS04170 0.39 -1.1
878,772 + LRK54_RS04170 0.39 -0.5
878,772 + LRK54_RS04170 0.39 -0.2
878,772 + LRK54_RS04170 0.39 +0.2
878,773 - LRK54_RS04170 0.39 -0.3
878,773 - LRK54_RS04170 0.39 -3.2
878,773 - LRK54_RS04170 0.39 -0.7
878,773 - LRK54_RS04170 0.39 -1.7
878,773 - LRK54_RS04170 0.39 -1.4
878,773 - LRK54_RS04170 0.39 +0.1
878,773 - LRK54_RS04170 0.39 +0.0
878,773 - LRK54_RS04170 0.39 -0.4
878,773 - LRK54_RS04170 0.39 -1.0
878,773 - LRK54_RS04170 0.39 -0.2
878,773 - LRK54_RS04170 0.39 +0.6
878,773 - LRK54_RS04170 0.39 -0.8
878,773 - LRK54_RS04170 0.39 +1.1
878,773 - LRK54_RS04170 0.39 +2.0
878,773 - LRK54_RS04170 0.39 -0.8

Or see this region's nucleotide sequence