Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3589

Experiment: 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3587 and Pf6N2E2_3588 are separated by 143 nucleotidesPf6N2E2_3588 and Pf6N2E2_3589 are separated by 61 nucleotidesPf6N2E2_3589 and Pf6N2E2_3590 are separated by 68 nucleotidesPf6N2E2_3590 and Pf6N2E2_3591 are separated by 72 nucleotidesPf6N2E2_3591 and Pf6N2E2_3592 are separated by 142 nucleotides Pf6N2E2_3587 - Azurin, at 4,179,016 to 4,179,462 _3587 Pf6N2E2_3588 - hypothetical protein, at 4,179,606 to 4,179,743 _3588 Pf6N2E2_3589 - Lysine decarboxylase family, at 4,179,805 to 4,180,392 _3589 Pf6N2E2_3590 - FIG00956548: hypothetical protein, at 4,180,461 to 4,180,649 _3590 Pf6N2E2_3591 - NUDIX hydrolase, at 4,180,722 to 4,181,099 _3591 Pf6N2E2_3592 - Protein containing transglutaminase-like domain, putative cysteine protease, at 4,181,242 to 4,182,135 _3592 Position (kb) 4179 4180 4181Strain fitness (log2 ratio) -2 -1 0 1 2at 4178.981 kb on - strandat 4179.080 kb on + strand, within Pf6N2E2_3587at 4179.081 kb on - strand, within Pf6N2E2_3587at 4179.188 kb on + strand, within Pf6N2E2_3587at 4179.188 kb on + strand, within Pf6N2E2_3587at 4179.188 kb on + strand, within Pf6N2E2_3587at 4179.188 kb on + strand, within Pf6N2E2_3587at 4179.189 kb on - strand, within Pf6N2E2_3587at 4179.189 kb on - strand, within Pf6N2E2_3587at 4179.440 kb on - strandat 4179.534 kb on + strandat 4179.564 kb on + strandat 4179.564 kb on + strandat 4179.571 kb on - strandat 4179.571 kb on - strandat 4179.618 kb on + strandat 4179.619 kb on - strandat 4179.619 kb on - strandat 4179.619 kb on - strandat 4179.619 kb on - strandat 4179.673 kb on + strand, within Pf6N2E2_3588at 4179.673 kb on + strand, within Pf6N2E2_3588at 4179.674 kb on - strand, within Pf6N2E2_3588at 4179.718 kb on - strand, within Pf6N2E2_3588at 4179.741 kb on + strandat 4179.771 kb on + strandat 4179.799 kb on + strandat 4179.799 kb on + strandat 4179.799 kb on + strandat 4179.799 kb on + strandat 4179.800 kb on - strandat 4179.800 kb on - strandat 4179.800 kb on - strandat 4179.800 kb on - strandat 4179.827 kb on + strandat 4179.828 kb on - strandat 4179.828 kb on - strandat 4179.862 kb on + strandat 4179.863 kb on - strandat 4180.226 kb on - strand, within Pf6N2E2_3589at 4180.255 kb on - strand, within Pf6N2E2_3589at 4180.419 kb on + strandat 4180.477 kb on - strandat 4180.477 kb on - strandat 4180.671 kb on + strandat 4180.671 kb on + strandat 4180.671 kb on + strandat 4180.671 kb on + strandat 4180.672 kb on - strandat 4180.672 kb on - strandat 4180.672 kb on - strandat 4180.672 kb on - strandat 4180.672 kb on - strandat 4180.709 kb on + strandat 4180.709 kb on + strandat 4180.861 kb on + strand, within Pf6N2E2_3591at 4180.862 kb on - strand, within Pf6N2E2_3591at 4180.862 kb on - strand, within Pf6N2E2_3591at 4180.862 kb on - strand, within Pf6N2E2_3591at 4180.862 kb on - strand, within Pf6N2E2_3591at 4180.906 kb on + strand, within Pf6N2E2_3591at 4180.906 kb on + strand, within Pf6N2E2_3591at 4180.955 kb on + strand, within Pf6N2E2_3591at 4181.124 kb on + strandat 4181.124 kb on + strandat 4181.124 kb on + strandat 4181.124 kb on + strandat 4181.124 kb on + strandat 4181.125 kb on - strandat 4181.125 kb on - strandat 4181.125 kb on - strandat 4181.125 kb on - strandat 4181.134 kb on + strandat 4181.222 kb on + strandat 4181.222 kb on + strandat 4181.222 kb on + strandat 4181.222 kb on + strandat 4181.223 kb on - strandat 4181.223 kb on - strandat 4181.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
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4,178,981 - -0.3
4,179,080 + Pf6N2E2_3587 0.14 +0.5
4,179,081 - Pf6N2E2_3587 0.15 +1.9
4,179,188 + Pf6N2E2_3587 0.38 +0.9
4,179,188 + Pf6N2E2_3587 0.38 +0.4
4,179,188 + Pf6N2E2_3587 0.38 -0.1
4,179,188 + Pf6N2E2_3587 0.38 +0.5
4,179,189 - Pf6N2E2_3587 0.39 -0.0
4,179,189 - Pf6N2E2_3587 0.39 +0.4
4,179,440 - +0.5
4,179,534 + +0.8
4,179,564 + -1.6
4,179,564 + +0.0
4,179,571 - -0.1
4,179,571 - -0.6
4,179,618 + +0.9
4,179,619 - +0.1
4,179,619 - +0.4
4,179,619 - -0.5
4,179,619 - +0.4
4,179,673 + Pf6N2E2_3588 0.49 -0.9
4,179,673 + Pf6N2E2_3588 0.49 +0.5
4,179,674 - Pf6N2E2_3588 0.49 +0.5
4,179,718 - Pf6N2E2_3588 0.81 +1.2
4,179,741 + -0.6
4,179,771 + +2.4
4,179,799 + -0.6
4,179,799 + +1.6
4,179,799 + -0.2
4,179,799 + +0.4
4,179,800 - +0.0
4,179,800 - +0.6
4,179,800 - +0.7
4,179,800 - +0.3
4,179,827 + +0.5
4,179,828 - +0.7
4,179,828 - -0.6
4,179,862 + +0.5
4,179,863 - -0.6
4,180,226 - Pf6N2E2_3589 0.72 -1.1
4,180,255 - Pf6N2E2_3589 0.77 -0.5
4,180,419 + +0.0
4,180,477 - -0.5
4,180,477 - -0.2
4,180,671 + +0.6
4,180,671 + +0.8
4,180,671 + -0.6
4,180,671 + -0.2
4,180,672 - +0.6
4,180,672 - +1.9
4,180,672 - -2.5
4,180,672 - +2.4
4,180,672 - +0.4
4,180,709 + -1.6
4,180,709 + -1.0
4,180,861 + Pf6N2E2_3591 0.37 +0.4
4,180,862 - Pf6N2E2_3591 0.37 +0.4
4,180,862 - Pf6N2E2_3591 0.37 -0.2
4,180,862 - Pf6N2E2_3591 0.37 +0.6
4,180,862 - Pf6N2E2_3591 0.37 -0.1
4,180,906 + Pf6N2E2_3591 0.49 +1.4
4,180,906 + Pf6N2E2_3591 0.49 -0.2
4,180,955 + Pf6N2E2_3591 0.62 +1.2
4,181,124 + +0.2
4,181,124 + +0.9
4,181,124 + +0.4
4,181,124 + +0.4
4,181,124 + +0.4
4,181,125 - +0.1
4,181,125 - +0.1
4,181,125 - -0.6
4,181,125 - +0.1
4,181,134 + -0.6
4,181,222 + -0.8
4,181,222 + +0.1
4,181,222 + -0.6
4,181,222 + -0.2
4,181,223 - +0.4
4,181,223 - +0.2
4,181,223 - -0.4

Or see this region's nucleotide sequence