Experiment: MoLS4 with Butyrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2692 and DVU2693 are separated by 85 nucleotides DVU2693 and DVU2694 are separated by 81 nucleotides DVU2694 and DVU2695 are separated by 8 nucleotides DVU2695 and DVU2696 overlap by 4 nucleotides DVU2696 and DVU2697 are separated by 12 nucleotides DVU2697 and DVU2698 are separated by 112 nucleotides
DVU2692: DVU2692 - conserved domain protein (TIGR), at 2,805,721 to 2,805,957
DVU2692
DVU2693: DVU2693 - hypothetical protein (TIGR), at 2,806,043 to 2,806,282
DVU2693
DVU2694: DVU2694 - hypothetical protein (TIGR), at 2,806,364 to 2,806,798
DVU2694
DVU2695: DVU2695 - conserved hypothetical protein (TIGR), at 2,806,807 to 2,807,223
DVU2695
DVU2696: DVU2696 - conserved hypothetical protein (TIGR), at 2,807,220 to 2,807,708
DVU2696
DVU2697: DVU2697 - hypothetical protein (TIGR), at 2,807,721 to 2,808,059
DVU2697
DVU2698: DVU2698 - lipoprotein, putative (TIGR), at 2,808,172 to 2,808,534
DVU2698
Position (kb)
2806
2807
2808 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2805.865 kb on + strand, within DVU2692 at 2805.946 kb on - strand at 2806.015 kb on + strand at 2806.155 kb on + strand, within DVU2693 at 2806.155 kb on + strand, within DVU2693 at 2806.155 kb on + strand, within DVU2693 at 2806.155 kb on + strand, within DVU2693 at 2806.155 kb on + strand, within DVU2693 at 2806.155 kb on + strand, within DVU2693 at 2806.163 kb on - strand, within DVU2693 at 2806.163 kb on - strand, within DVU2693 at 2806.163 kb on - strand, within DVU2693 at 2806.163 kb on - strand, within DVU2693 at 2806.277 kb on - strand at 2806.364 kb on - strand at 2806.365 kb on + strand at 2806.373 kb on - strand at 2806.486 kb on - strand, within DVU2694 at 2806.542 kb on - strand, within DVU2694 at 2806.574 kb on + strand, within DVU2694 at 2806.608 kb on + strand, within DVU2694 at 2806.608 kb on + strand, within DVU2694 at 2806.616 kb on - strand, within DVU2694 at 2806.670 kb on + strand, within DVU2694 at 2806.736 kb on - strand, within DVU2694 at 2806.742 kb on - strand, within DVU2694 at 2806.747 kb on - strand, within DVU2694 at 2806.755 kb on - strand at 2806.759 kb on + strand at 2806.782 kb on + strand at 2806.790 kb on - strand at 2806.987 kb on - strand, within DVU2695 at 2806.990 kb on + strand, within DVU2695 at 2807.050 kb on - strand, within DVU2695 at 2807.121 kb on + strand, within DVU2695 at 2807.121 kb on + strand, within DVU2695 at 2807.121 kb on + strand, within DVU2695 at 2807.138 kb on + strand, within DVU2695 at 2807.138 kb on + strand, within DVU2695 at 2807.187 kb on + strand at 2807.187 kb on + strand at 2807.220 kb on - strand at 2807.229 kb on + strand at 2807.237 kb on - strand at 2807.278 kb on - strand, within DVU2696 at 2807.323 kb on - strand, within DVU2696 at 2807.332 kb on - strand, within DVU2696 at 2807.332 kb on - strand, within DVU2696 at 2807.332 kb on - strand, within DVU2696 at 2807.332 kb on - strand, within DVU2696 at 2807.332 kb on - strand, within DVU2696 at 2807.332 kb on - strand, within DVU2696 at 2807.332 kb on - strand, within DVU2696 at 2807.332 kb on - strand, within DVU2696 at 2807.410 kb on + strand, within DVU2696 at 2807.418 kb on - strand, within DVU2696 at 2807.437 kb on - strand, within DVU2696 at 2807.461 kb on - strand, within DVU2696 at 2807.598 kb on + strand, within DVU2696 at 2807.602 kb on + strand, within DVU2696 at 2807.672 kb on + strand at 2807.697 kb on - strand at 2807.853 kb on + strand, within DVU2697 at 2807.860 kb on - strand, within DVU2697 at 2807.862 kb on - strand, within DVU2697 at 2807.918 kb on - strand, within DVU2697 at 2808.006 kb on - strand, within DVU2697 at 2808.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Butyrate 10mM remove 2,805,865 + DVU2692 0.61 -1.1 2,805,946 - +2.0 2,806,015 + -0.4 2,806,155 + DVU2693 0.47 -0.3 2,806,155 + DVU2693 0.47 +0.6 2,806,155 + DVU2693 0.47 -0.5 2,806,155 + DVU2693 0.47 -0.4 2,806,155 + DVU2693 0.47 -0.1 2,806,155 + DVU2693 0.47 -1.4 2,806,163 - DVU2693 0.50 +0.7 2,806,163 - DVU2693 0.50 -0.0 2,806,163 - DVU2693 0.50 +0.8 2,806,163 - DVU2693 0.50 -0.6 2,806,277 - +0.0 2,806,364 - -0.1 2,806,365 + -0.8 2,806,373 - -0.5 2,806,486 - DVU2694 0.28 +0.3 2,806,542 - DVU2694 0.41 -0.7 2,806,574 + DVU2694 0.48 -0.7 2,806,608 + DVU2694 0.56 -0.1 2,806,608 + DVU2694 0.56 -0.3 2,806,616 - DVU2694 0.58 +0.1 2,806,670 + DVU2694 0.70 -2.7 2,806,736 - DVU2694 0.86 -0.3 2,806,742 - DVU2694 0.87 +1.6 2,806,747 - DVU2694 0.88 +0.7 2,806,755 - -0.2 2,806,759 + -1.5 2,806,782 + -0.7 2,806,790 - -1.3 2,806,987 - DVU2695 0.43 -0.2 2,806,990 + DVU2695 0.44 +0.5 2,807,050 - DVU2695 0.58 -0.5 2,807,121 + DVU2695 0.75 +1.2 2,807,121 + DVU2695 0.75 +0.0 2,807,121 + DVU2695 0.75 +0.9 2,807,138 + DVU2695 0.79 +1.5 2,807,138 + DVU2695 0.79 -0.6 2,807,187 + -0.3 2,807,187 + -0.7 2,807,220 - -0.3 2,807,229 + +0.0 2,807,237 - -0.2 2,807,278 - DVU2696 0.12 +0.8 2,807,323 - DVU2696 0.21 +0.6 2,807,332 - DVU2696 0.23 -0.9 2,807,332 - DVU2696 0.23 +0.7 2,807,332 - DVU2696 0.23 -0.3 2,807,332 - DVU2696 0.23 +0.0 2,807,332 - DVU2696 0.23 -0.5 2,807,332 - DVU2696 0.23 -0.9 2,807,332 - DVU2696 0.23 +0.6 2,807,332 - DVU2696 0.23 -0.0 2,807,410 + DVU2696 0.39 -0.2 2,807,418 - DVU2696 0.40 -2.3 2,807,437 - DVU2696 0.44 +0.0 2,807,461 - DVU2696 0.49 -0.7 2,807,598 + DVU2696 0.77 +0.1 2,807,602 + DVU2696 0.78 +0.7 2,807,672 + -0.7 2,807,697 - -0.8 2,807,853 + DVU2697 0.39 -0.4 2,807,860 - DVU2697 0.41 -0.0 2,807,862 - DVU2697 0.42 +2.6 2,807,918 - DVU2697 0.58 -0.8 2,808,006 - DVU2697 0.84 -0.2 2,808,077 - -1.5
Or see this region's nucleotide sequence