Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01920 and BWI76_RS01925 are separated by 214 nucleotides BWI76_RS01925 and BWI76_RS01930 are separated by 197 nucleotides
BWI76_RS01920: BWI76_RS01920 - alanine racemase, at 391,002 to 392,081
_RS01920
BWI76_RS01925: BWI76_RS01925 - aromatic amino acid aminotransferase, at 392,296 to 393,489
_RS01925
BWI76_RS01930: BWI76_RS01930 - acid phosphatase/phosphotransferase, at 393,687 to 394,400
_RS01930
Position (kb) 392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 391.301 kb on - strand, within BWI76_RS01920 at 391.301 kb on - strand, within BWI76_RS01920 at 391.417 kb on + strand, within BWI76_RS01920 at 391.429 kb on + strand, within BWI76_RS01920 at 391.439 kb on + strand, within BWI76_RS01920 at 391.439 kb on + strand, within BWI76_RS01920 at 391.447 kb on - strand, within BWI76_RS01920 at 391.555 kb on + strand, within BWI76_RS01920 at 391.590 kb on + strand, within BWI76_RS01920 at 391.830 kb on + strand, within BWI76_RS01920 at 392.257 kb on - strand at 392.267 kb on - strand at 392.508 kb on + strand, within BWI76_RS01925 at 392.563 kb on - strand, within BWI76_RS01925 at 392.596 kb on - strand, within BWI76_RS01925 at 392.840 kb on + strand, within BWI76_RS01925 at 392.860 kb on + strand, within BWI76_RS01925 at 392.988 kb on - strand, within BWI76_RS01925 at 393.187 kb on + strand, within BWI76_RS01925 at 393.212 kb on - strand, within BWI76_RS01925 at 393.263 kb on + strand, within BWI76_RS01925 at 393.273 kb on + strand, within BWI76_RS01925 at 393.280 kb on - strand, within BWI76_RS01925 at 393.281 kb on + strand, within BWI76_RS01925 at 393.369 kb on + strand, within BWI76_RS01925 at 393.371 kb on - strand at 393.371 kb on - strand at 393.371 kb on - strand at 393.390 kb on + strand at 393.457 kb on - strand at 393.457 kb on - strand at 393.463 kb on + strand at 393.484 kb on + strand at 393.493 kb on - strand at 393.504 kb on + strand at 393.512 kb on - strand at 393.531 kb on + strand at 393.531 kb on + strand at 393.531 kb on + strand at 393.539 kb on - strand at 393.583 kb on - strand at 393.699 kb on + strand at 393.706 kb on + strand at 393.823 kb on - strand, within BWI76_RS01930 at 393.823 kb on - strand, within BWI76_RS01930 at 393.838 kb on - strand, within BWI76_RS01930 at 394.227 kb on + strand, within BWI76_RS01930 at 394.285 kb on + strand, within BWI76_RS01930 at 394.369 kb on + strand at 394.377 kb on - strand at 394.473 kb on + strand at 394.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 391,301 - BWI76_RS01920 0.28 +1.0 391,301 - BWI76_RS01920 0.28 +1.6 391,417 + BWI76_RS01920 0.38 +0.2 391,429 + BWI76_RS01920 0.40 +0.1 391,439 + BWI76_RS01920 0.40 +0.7 391,439 + BWI76_RS01920 0.40 +0.0 391,447 - BWI76_RS01920 0.41 +1.0 391,555 + BWI76_RS01920 0.51 +1.0 391,590 + BWI76_RS01920 0.54 -1.0 391,830 + BWI76_RS01920 0.77 -1.0 392,257 - +0.5 392,267 - +0.0 392,508 + BWI76_RS01925 0.18 -1.0 392,563 - BWI76_RS01925 0.22 -0.6 392,596 - BWI76_RS01925 0.25 -1.6 392,840 + BWI76_RS01925 0.46 +0.1 392,860 + BWI76_RS01925 0.47 -1.3 392,988 - BWI76_RS01925 0.58 -2.2 393,187 + BWI76_RS01925 0.75 -1.9 393,212 - BWI76_RS01925 0.77 -0.4 393,263 + BWI76_RS01925 0.81 -1.2 393,273 + BWI76_RS01925 0.82 +0.0 393,280 - BWI76_RS01925 0.82 +0.5 393,281 + BWI76_RS01925 0.82 -2.5 393,369 + BWI76_RS01925 0.90 -1.0 393,371 - -2.9 393,371 - +1.0 393,371 - +0.6 393,390 + +0.3 393,457 - -2.2 393,457 - -1.7 393,463 + +0.2 393,484 + +0.5 393,493 - +0.4 393,504 + +0.1 393,512 - -2.2 393,531 + -0.2 393,531 + +0.4 393,531 + -0.5 393,539 - +0.4 393,583 - -0.8 393,699 + -0.4 393,706 + +1.0 393,823 - BWI76_RS01930 0.19 +0.2 393,823 - BWI76_RS01930 0.19 -0.2 393,838 - BWI76_RS01930 0.21 -0.1 394,227 + BWI76_RS01930 0.76 -0.3 394,285 + BWI76_RS01930 0.84 -1.5 394,369 + +0.6 394,377 - +0.2 394,473 + -1.2 394,488 - -0.1
Or see this region's nucleotide sequence